Non-Coding RNA Search

Ss1.1-rpigcf0_006533.5

Sequence:


               
               CGACAAATTTCCCCCACATACTCTCTGGCAATCTACCTCAGGACTGACCTCTAATGTCCT
TGCTATTCTTGTCTTGGGTGTCTCATGAGAGACTACCATCTTGCCAAATTATGAAGGAGT
TTGGTCATATGGATCTACTTCTCTGAGGGGTGAGGATGAGACCACCCAGAGTCTGTTGAT
TTCACTTTAATCCAAATTTTAAACAAGAGGAGCTGAAGCTGTATTCAAGTCAACAGTGTC
AAAATTATATCCTGGCTCCCAACAAAGTGACTGTGAAACAGCATTAGGCACAAATTCCCT
AATACATATGAGCACAAATGCAAATTAATGATCACTGAACATATCCTCACAAAACTCCAC
AAATGGCACAACCCCTCAACACTTCAGTGTGAAATAAAACAAAATGATTCCAAACTTATG
CTGAAATCAGTAGAAAAAAGTTTTAGTTAAAAAATGATTCATTGTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACAAATTTCCCCCACATACTCTCTGGCAATCTACCTCAGGACTGACCTCTAATGTCCT
TGCTATTCTTGTCTTGGGTGTCTCATGAGAGACTACCATCTTGCCAAATTATGAAGGAGT
TTGGTCATATGGATCTACTTCTCTGAGGGGTGAGGATGAGACCACCCAGAGTCTGTTGAT
TTCACTTTAATCCAAATTTTAAACAAGAGGAGCTGAAGCTGTATTCAAGTCAACAGTGTC
AAAATTATATCCTGGCTCCCAACAAAGTGACTGTGAAACAGCATTAGGCACAAATTCCCT
AATACATATGAGCACAAATGCAAATTAATGATCACTGAACATATCCTCACAAAACTCCAC
AAATGGCACAACCCCTCAACACTTCAGTGTGAAATAAAACAAAATGATTCCAAACTTATG
CTGAAATCAGTAGAAAAAAGTTTTAGTTAAAAAATGATTCATTGTACA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               2-455, gnl|bosTau2|chr1 (23664795-23664360)
               

               
               2-455, gnl|canFam2|chr33 (9532064-9532551)
               

               
               2-455, gnl|dasNov1|scaffold_165006 (3243-3727)
               

               
               2-455, gnl|echTel1|scaffold_321148 (106899-106349)
               

               
               2-455, gnl|hg17|chr3 (101129944-101130462)
               

               
               2-455, gnl|Hg17|chr3 (101130582-101130119)
               

               
               2-455, gnl|mm7|chr16 (57370455-57370074)
               

               
               2-455, gnl|oryCun1|scaffold_141817 (2667-3186)
               

               
               2-455, gnl|panTro1|chr2 (102343602-102344120)
               

               
               2-455, gnl|rheMac2|chr2 (20125296-20125814)
               

               
               2-455, gnl|rn3|chr11 (43915221-43915605)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-455, gnl|bosTau2|chr1 (23664795-23664360)
               

               
               2-455, gnl|canFam2|chr33 (9532064-9532551)
               

               
               2-455, gnl|dasNov1|scaffold_165006 (3243-3727)
               

               
               2-455, gnl|echTel1|scaffold_321148 (106899-106349)
               

               
               2-455, gnl|hg17|chr3 (101129944-101130462)
               

               
               2-455, gnl|Hg17|chr3 (101130582-101130119)
               

               
               2-455, gnl|mm7|chr16 (57370455-57370074)
               

               
               2-455, gnl|oryCun1|scaffold_141817 (2667-3186)
               

               
               2-455, gnl|panTro1|chr2 (102343602-102344120)
               

               
               2-455, gnl|rheMac2|chr2 (20125296-20125814)
               

               
               2-455, gnl|rn3|chr11 (43915221-43915605)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	2-455, gnl\|bosTau2\|chr1 (23664795-23664360)
	2-455, gnl\|canFam2\|chr33 (9532064-9532551)
	2-455, gnl\|dasNov1\|scaffold_165006 (3243-3727)
	2-455, gnl\|echTel1\|scaffold_321148 (106899-106349)
	2-455, gnl\|hg17\|chr3 (101129944-101130462)
	2-455, gnl\|Hg17\|chr3 (101130582-101130119)
	2-455, gnl\|mm7\|chr16 (57370455-57370074)
	2-455, gnl\|oryCun1\|scaffold_141817 (2667-3186)
	2-455, gnl\|panTro1\|chr2 (102343602-102344120)
	2-455, gnl\|rheMac2\|chr2 (20125296-20125814)
	2-455, gnl\|rn3\|chr11 (43915221-43915605)