Ss1.1-rpigcf0_006628.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATAATGTAACTGCCCTGCTGGAAGTTTCTCCCATACATGCATTCCACCATGTCCTTGAT CTGCTGAGGATCCAGTCTCTTCAGAAACTGATTTTTGTTAAGAGCATCTGTAATGAGCTT CTTCTCACTGGTGTAATGGAAAGGAGATGTTTGTTACCATTAGTGAAAACCATGTTTTGT TCTTTAGATTTATTTCATTTTTATTCTTGGTAGTACTACCCATGCAGTTACAACTTTTCC AGCAAGGACAAATTTTTTTTTTCCTAGCATCACCAACACTTGATCCTTATAACTACCATA CGTTACTTGTAAATCCTCCGAAAATGTTTTTGAATATTTTTCTGGTACTCTTTATTAAAT CAGTTTTGTCATCACTCTTAATTGTCATCATCACAAATGCAGCATCCTTCGAGACCCCTT GACACAGTACTCATGGCCATGTGACTTCAGATGGAAGCGAATCTGATTGGCAGGCAGGTG TATCTAAGGGGCCGTAACATTCATTCATTGGTGTATTGTGCACATGGGCCTGATTGCTGT GGTGCTGGTTATTTCACACCTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATAATGTAACTGCCCTGCTGGAAGTTTCTCCCATACATGCATTCCACCATGTCCTTGAT CTGCTGAGGATCCAGTCTCTTCAGAAACTGATTTTTGTTAAGAGCATCTGTAATGAGCTT CTTCTCACTGGTGTAATGGAAAGGAGATGTTTGTTACCATTAGTGAAAACCATGTTTTGT TCTTTAGATTTATTTCATTTTTATTCTTGGTAGTACTACCCATGCAGTTACAACTTTTCC AGCAAGGACAAATTTTTTTTTTCCTAGCATCACCAACACTTGATCCTTATAACTACCATA CGTTACTTGTAAATCCTCCGAAAATGTTTTTGAATATTTTTCTGGTACTCTTTATTAAAT CAGTTTTGTCATCACTCTTAATTGTCATCATCACAAATGCAGCATCCTTCGAGACCCCTT GACACAGTACTCATGGCCATGTGACTTCAGATGGAAGCGAATCTGATTGGCAGGCAGGTG TATCTAAGGGGCCGTAACATTCATTCATTGGTGTATTGTGCACATGGGCCTGATTGCTGT GGTGCTGGTTATTTCACACCTTAT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 269-387, - strand, RNAz p=0.891456 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 269-387, - strand, RNAz p=0.891456 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-190, gnl|bosTau2|chr6 (53385317-53385506) | |
| 1-190, gnl|canFam2|chr32 (8295222-8295409) | |
| 1-190, gnl|danRer3|chr5 (35232495-35232675) | |
| 1-190, gnl|dasNov1|scaffold_14871 (14603-14411) | |
| 1-190, gnl|echTel1|scaffold_305068 (3305-3118) | |
| 1-190, gnl|fr1|chrUn (155058013-155057832) | |
| 1-190, gnl|galGal2|chr4 (46207713-46207525) | |
| 1-190, gnl|hg17|chr4 (82453115-82453302) | |
| 1-190, gnl|Hg17|chr4 (82453166-82453341) | |
| 1-190, gnl|loxAfr1|scaffold_396 (164543-164368) | |
| 1-190, gnl|mm7|chr5 (98212116-98212308) | |
| 1-190, gnl|Mm7|chr5 (98212167-98212343) | |
| 1-190, gnl|monDom2|scaffold_37 (19273486-19273299) | |
| 1-190, gnl|oryCun1|scaffold_175871 (71603-71416) | |
| 1-190, gnl|panTro1|chr3 (51275234-51275047) | |
| 1-190, gnl|rheMac2|chr5 (48400043-48399856) | |
| 1-190, gnl|rn3|chr14 (11914787-11914595) | |
| 1-190, gnl|tetNig1|chr12 (9659691-9659511) | |
| 1-190, gnl|xenTro1|scaffold_267 (679242-679432) | |
| 230-456, gnl|bosTau2|chr6 (53385843-53386068) | |
| 230-456, gnl|Hg17|chr4 (82453395-82453615) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-190, gnl|bosTau2|chr6 (53385317-53385506) | |
| 1-190, gnl|canFam2|chr32 (8295222-8295409) | |
| 1-190, gnl|danRer3|chr5 (35232495-35232675) | |
| 1-190, gnl|dasNov1|scaffold_14871 (14603-14411) | |
| 1-190, gnl|echTel1|scaffold_305068 (3305-3118) | |
| 1-190, gnl|fr1|chrUn (155058013-155057832) | |
| 1-190, gnl|galGal2|chr4 (46207713-46207525) | |
| 1-190, gnl|hg17|chr4 (82453115-82453302) | |
| 1-190, gnl|Hg17|chr4 (82453166-82453341) | |
| 1-190, gnl|loxAfr1|scaffold_396 (164543-164368) | |
| 1-190, gnl|mm7|chr5 (98212116-98212308) | |
| 1-190, gnl|Mm7|chr5 (98212167-98212343) | |
| 1-190, gnl|monDom2|scaffold_37 (19273486-19273299) | |
| 1-190, gnl|oryCun1|scaffold_175871 (71603-71416) | |
| 1-190, gnl|panTro1|chr3 (51275234-51275047) | |
| 1-190, gnl|rheMac2|chr5 (48400043-48399856) | |
| 1-190, gnl|rn3|chr14 (11914787-11914595) | |
| 1-190, gnl|tetNig1|chr12 (9659691-9659511) | |
| 1-190, gnl|xenTro1|scaffold_267 (679242-679432) | |
| 230-456, gnl|bosTau2|chr6 (53385843-53386068) | |
| 230-456, gnl|Hg17|chr4 (82453395-82453615) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ctl (0.612276) |