Non-Coding RNA Search

Ss1.1-rpigcf0_006690.5

Sequence:


               
               AATTATATTAATACATGTATTTACAATAGTGTATTTTTTAGAATAAAAGGAAAAGTAAAA
TGTTGCATTGTGATTTCCCAGAAGCTATTGCTTAAAGTGAGATTAAGGGAAAAAAAATGA
TATGACTAAAATTCAGGTGGTACATGAATAGTGTGAAGATGGGAAGATAGATCCATGGCC
GGCTGAGGTTTAGGAAGCGCCTAGAGACTGGATGCAAATGTGTCCAGCTGCTTTTCTGCT
TTTGTGCTGTCTAATGAAGTATCTGCCCTTCTTCCCTCCATCCCATCCAGCCTTTACAAG
TTGATGAAGCCCCCCCACCCACACCCCGCCCCGAGCTCTGGACTGGTCCCCAAAGAAGAT
TAAACGAGATGAATATTTCATGGCCCTTGACTGACAGCTGCCGAGGACCTGTTGTGGGTC
TGGCGCCCACATCTAGTTAAGGAAGGGGGGCAGGCAGAGAGGAGGGGAAGGAAGAGCCCA
GAGCTGAGCCATTGATCCGTTGGGCCCAATCTGCCCTGATGAAACGTTCTGCTCCCAGCT
CCAGAGGCAAAGGCAGCAAGTAATGGGCTTTAAGAGGCACAGGGACCAGTGGCAGCCCGG
CCACCTAGCCCCCCTGGGGCCCACAGAGACTCCACCAGGCCCCCGAAGACCCATTTCCCC
GTCTCCAGCTGTGGCCCCCTCTGTCCTCACGGTGCTGAACTCAGTGTTTCTGACGCCTAA
GGCTCATCACCCCATTAAGGTCTGACGCCAAGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTATATTAATACATGTATTTACAATAGTGTATTTTTTAGAATAAAAGGAAAAGTAAAA
TGTTGCATTGTGATTTCCCAGAAGCTATTGCTTAAAGTGAGATTAAGGGAAAAAAAATGA
TATGACTAAAATTCAGGTGGTACATGAATAGTGTGAAGATGGGAAGATAGATCCATGGCC
GGCTGAGGTTTAGGAAGCGCCTAGAGACTGGATGCAAATGTGTCCAGCTGCTTTTCTGCT
TTTGTGCTGTCTAATGAAGTATCTGCCCTTCTTCCCTCCATCCCATCCAGCCTTTACAAG
TTGATGAAGCCCCCCCACCCACACCCCGCCCCGAGCTCTGGACTGGTCCCCAAAGAAGAT
TAAACGAGATGAATATTTCATGGCCCTTGACTGACAGCTGCCGAGGACCTGTTGTGGGTC
TGGCGCCCACATCTAGTTAAGGAAGGGGGGCAGGCAGAGAGGAGGGGAAGGAAGAGCCCA
GAGCTGAGCCATTGATCCGTTGGGCCCAATCTGCCCTGATGAAACGTTCTGCTCCCAGCT
CCAGAGGCAAAGGCAGCAAGTAATGGGCTTTAAGAGGCACAGGGACCAGTGGCAGCCCGG
CCACCTAGCCCCCCTGGGGCCCACAGAGACTCCACCAGGCCCCCGAAGACCCATTTCCCC
GTCTCCAGCTGTGGCCCCCTCTGTCCTCACGGTGCTGAACTCAGTGTTTCTGACGCCTAA
GGCTCATCACCCCATTAAGGTCTGACGCCAAGCTCC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               114-231, - strand, RNAz p=0.985109
               

               
               245-388, - strand, RNAz p=0.996632
               

               
               568-690, - strand, RNAz p=0.998533

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-231, - strand, RNAz p=0.985109
               

               
               245-388, - strand, RNAz p=0.996632
               

               
               568-690, - strand, RNAz p=0.998533

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               4-231, gnl|bosTau2|chr17 (36555128-36555344)
               

               
               4-231, gnl|Hg17|chr12 (114515910-114515708)
               


               
               238-690, gnl|bosTau2|chr17 (36555410-36555852)
               

               
               238-690, gnl|canFam2|chr26 (15535248-15535789)
               

               
               238-690, gnl|dasNov1|scaffold_312 (102222-102755)
               

               
               238-690, gnl|galGal2|chr15 (11677604-11677019)
               

               
               238-690, gnl|hg17|chr12 (114515092-114515632)
               

               
               238-690, gnl|Hg17|chr12 (114515626-114515152)
               

               
               238-690, gnl|loxAfr1|scaffold_13475 (23006-23539)
               

               
               238-690, gnl|mm7|chr5 (118219828-118219324)
               

               
               238-690, gnl|Mm7|chr5 (118219316-118219769)
               

               
               238-690, gnl|monDom2|scaffold_115 (2673676-2674312)
               

               
               238-690, gnl|oryCun1|scaffold_203269 (121282-121804)
               

               
               238-690, gnl|panTro1|chr10 (117203033-117203573)
               

               
               238-690, gnl|rheMac2|chr11 (116549990-116550535)
               

               
               238-690, gnl|rn3|chr12 (38769952-38770454)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-231, gnl|bosTau2|chr17 (36555128-36555344)
               

               
               4-231, gnl|Hg17|chr12 (114515910-114515708)
               


               
               238-690, gnl|bosTau2|chr17 (36555410-36555852)
               

               
               238-690, gnl|canFam2|chr26 (15535248-15535789)
               

               
               238-690, gnl|dasNov1|scaffold_312 (102222-102755)
               

               
               238-690, gnl|galGal2|chr15 (11677604-11677019)
               

               
               238-690, gnl|hg17|chr12 (114515092-114515632)
               

               
               238-690, gnl|Hg17|chr12 (114515626-114515152)
               

               
               238-690, gnl|loxAfr1|scaffold_13475 (23006-23539)
               

               
               238-690, gnl|mm7|chr5 (118219828-118219324)
               

               
               238-690, gnl|Mm7|chr5 (118219316-118219769)
               

               
               238-690, gnl|monDom2|scaffold_115 (2673676-2674312)
               

               
               238-690, gnl|oryCun1|scaffold_203269 (121282-121804)
               

               
               238-690, gnl|panTro1|chr10 (117203033-117203573)
               

               
               238-690, gnl|rheMac2|chr11 (116549990-116550535)
               

               
               238-690, gnl|rn3|chr12 (38769952-38770454)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ctl (0.306138)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)
               

               
               clu (0.119646)

	114-231, - strand, RNAz p=0.985109
	245-388, - strand, RNAz p=0.996632
	568-690, - strand, RNAz p=0.998533

	4-231, gnl\|bosTau2\|chr17 (36555128-36555344)
	4-231, gnl\|Hg17\|chr12 (114515910-114515708)

	238-690, gnl\|bosTau2\|chr17 (36555410-36555852)
	238-690, gnl\|canFam2\|chr26 (15535248-15535789)
	238-690, gnl\|dasNov1\|scaffold_312 (102222-102755)
	238-690, gnl\|galGal2\|chr15 (11677604-11677019)
	238-690, gnl\|hg17\|chr12 (114515092-114515632)
	238-690, gnl\|Hg17\|chr12 (114515626-114515152)
	238-690, gnl\|loxAfr1\|scaffold_13475 (23006-23539)
	238-690, gnl\|mm7\|chr5 (118219828-118219324)
	238-690, gnl\|Mm7\|chr5 (118219316-118219769)
	238-690, gnl\|monDom2\|scaffold_115 (2673676-2674312)
	238-690, gnl\|oryCun1\|scaffold_203269 (121282-121804)
	238-690, gnl\|panTro1\|chr10 (117203033-117203573)
	238-690, gnl\|rheMac2\|chr11 (116549990-116550535)
	238-690, gnl\|rn3\|chr12 (38769952-38770454)