Non-Coding RNA Search

Ss1.1-rpigcf0_006801.5

Sequence:


               
               GTTTTGTTTTTT------------------------------------------------
------------------------------------------------------------
------------------------GTAGTATTCCAGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATACACACCACATCCTCTTTATTCATTCT
TCTGTTGCTGGACACTTATGTTGCTTCCATACCTTCAACCATACTTCTGATTGGAGCCAT
TATTCCCCCGCCTGACCCAGAAAAAGGCAATTTTATAATTCAGTAAAGTTGACAAATGTT
TTCTCTAAAGGCCCAGATTGTATTTTTGTCTCTGTTGGCAGCTATTCAACCCTACTTTTG
TAGTGGGAAAGCAACCATGGACATTATGTTAACTAATGGGGTGTAGATATTTTCCATTGA
ATTCGAATTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTGTTTTTT------------------------------------------------
------------------------------------------------------------
------------------------GTAGTATTCCAGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATACACACCACATCCTCTTTATTCATTCT
TCTGTTGCTGGACACTTATGTTGCTTCCATACCTTCAACCATACTTCTGATTGGAGCCAT
TATTCCCCCGCCTGACCCAGAAAAAGGCAATTTTATAATTCAGTAAAGTTGACAAATGTT
TTCTCTAAAGGCCCAGATTGTATTTTTGTCTCTGTTGGCAGCTATTCAACCCTACTTTTG
TAGTGGGAAAGCAACCATGGACATTATGTTAACTAATGGGGTGTAGATATTTTCCATTGA
ATTCGAATTCCT

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               75-349, gnl|bosTau2|chr20 (12229800-12230073)
               

               
               75-349, gnl|canFam2|chr2 (47210046-47210344)
               

               
               75-349, gnl|hg17|chr5 (56623856-56624188)
               

               
               75-349, gnl|loxAfr1|scaffold_66816 (499-860)
               

               
               75-349, gnl|panTro1|chr4 (59535916-59535584)
               

               
               75-349, gnl|rheMac2|chr6 (54957397-54957729)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-349, gnl|bosTau2|chr20 (12229800-12230073)
               

               
               75-349, gnl|canFam2|chr2 (47210046-47210344)
               

               
               75-349, gnl|hg17|chr5 (56623856-56624188)
               

               
               75-349, gnl|loxAfr1|scaffold_66816 (499-860)
               

               
               75-349, gnl|panTro1|chr4 (59535916-59535584)
               

               
               75-349, gnl|rheMac2|chr6 (54957397-54957729)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	75-349, gnl\|bosTau2\|chr20 (12229800-12230073)
	75-349, gnl\|canFam2\|chr2 (47210046-47210344)
	75-349, gnl\|hg17\|chr5 (56623856-56624188)
	75-349, gnl\|loxAfr1\|scaffold_66816 (499-860)
	75-349, gnl\|panTro1\|chr4 (59535916-59535584)
	75-349, gnl\|rheMac2\|chr6 (54957397-54957729)