Non-Coding RNA Search

Ss1.1-rpigcf0_006870.5

Sequence:


               
               GGCTGCAGGAATCGAATAGGAAATGAGGCTGAGTGAAATTACATGAATTACCCAGATTAC
AGAGTGAGTAGCAGACCTCAGATTAGTTACTAGACTTCTGGATTTCTATTTTGTGGCACT
TTATATTTCAGCAAACTGGGTCCTATCTTTTTCCTGCAGACTTAAGTGCTTTCTTCAGTG
TGAATGACCTTCAGCAAGTTATATGTTCTTTCTGTGCAAGGGTCTAATTAGTACTCTGAG
AAGGTTACAGTGGTCCACTTCCCAATATTGTGCGGACAATAATTAATAACTATAAAACAC
TCTGCAATCAAAGCACAATCCAAACACCAACATGGCGCAACCAAGTCTATTTCACAGTAC
TTAACTTGCCATCCAATACGGGAGAAATCAGTAGTGCAGTTCTTGAATGACTTTGCAGAA
ATGGCTATTTCTTATATATTTTGAAAGATTGTCTTATAGCCAGGAAAAAGAATCAAACTA
TTCATATTAATTTATTATAAGATGTTTATAGATGACTATTGTTTTTGCTCTTTAATATTT
TTAAGACATATGTGCCTTTTTAATGAGAAATTGGAAATACTGAGTTTTATCTACAAGGAG
CATAAATCCTCCATGAATCTTAACTATCATGCATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGCAGGAATCGAATAGGAAATGAGGCTGAGTGAAATTACATGAATTACCCAGATTAC
AGAGTGAGTAGCAGACCTCAGATTAGTTACTAGACTTCTGGATTTCTATTTTGTGGCACT
TTATATTTCAGCAAACTGGGTCCTATCTTTTTCCTGCAGACTTAAGTGCTTTCTTCAGTG
TGAATGACCTTCAGCAAGTTATATGTTCTTTCTGTGCAAGGGTCTAATTAGTACTCTGAG
AAGGTTACAGTGGTCCACTTCCCAATATTGTGCGGACAATAATTAATAACTATAAAACAC
TCTGCAATCAAAGCACAATCCAAACACCAACATGGCGCAACCAAGTCTATTTCACAGTAC
TTAACTTGCCATCCAATACGGGAGAAATCAGTAGTGCAGTTCTTGAATGACTTTGCAGAA
ATGGCTATTTCTTATATATTTTGAAAGATTGTCTTATAGCCAGGAAAAAGAATCAAACTA
TTCATATTAATTTATTATAAGATGTTTATAGATGACTATTGTTTTTGCTCTTTAATATTT
TTAAGACATATGTGCCTTTTTAATGAGAAATTGGAAATACTGAGTTTTATCTACAAGGAG
CATAAATCCTCCATGAATCTTAACTATCATGCATAT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               18-624, gnl|bosTau2|chr8 (16188577-16187977)
               

               
               18-624, gnl|canFam2|chr11 (32116979-32117515)
               

               
               18-624, gnl|dasNov1|scaffold_206064 (1570-2126)
               

               
               18-624, gnl|echTel1|scaffold_294156 (5744-6306)
               

               
               18-624, gnl|hg17|chr9 (8291018-8291583)
               

               
               18-624, gnl|Hg17|chr9 (8291026-8291632)
               

               
               18-624, gnl|mm7|chr4 (75324327-75324813)
               

               
               18-624, gnl|Mm7|chr4 (75324335-75324865)
               

               
               18-624, gnl|oryCun1|scaffold_210064 (436331-435827)
               

               
               18-624, gnl|panTro1|chr11 (8216582-8217148)
               

               
               18-624, gnl|rheMac2|chr15 (68856486-68855924)
               

               
               18-624, gnl|rn3|chr5 (94047045-94047536)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-624, gnl|bosTau2|chr8 (16188577-16187977)
               

               
               18-624, gnl|canFam2|chr11 (32116979-32117515)
               

               
               18-624, gnl|dasNov1|scaffold_206064 (1570-2126)
               

               
               18-624, gnl|echTel1|scaffold_294156 (5744-6306)
               

               
               18-624, gnl|hg17|chr9 (8291018-8291583)
               

               
               18-624, gnl|Hg17|chr9 (8291026-8291632)
               

               
               18-624, gnl|mm7|chr4 (75324327-75324813)
               

               
               18-624, gnl|Mm7|chr4 (75324335-75324865)
               

               
               18-624, gnl|oryCun1|scaffold_210064 (436331-435827)
               

               
               18-624, gnl|panTro1|chr11 (8216582-8217148)
               

               
               18-624, gnl|rheMac2|chr15 (68856486-68855924)
               

               
               18-624, gnl|rn3|chr5 (94047045-94047536)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	18-624, gnl\|bosTau2\|chr8 (16188577-16187977)
	18-624, gnl\|canFam2\|chr11 (32116979-32117515)
	18-624, gnl\|dasNov1\|scaffold_206064 (1570-2126)
	18-624, gnl\|echTel1\|scaffold_294156 (5744-6306)
	18-624, gnl\|hg17\|chr9 (8291018-8291583)
	18-624, gnl\|Hg17\|chr9 (8291026-8291632)
	18-624, gnl\|mm7\|chr4 (75324327-75324813)
	18-624, gnl\|Mm7\|chr4 (75324335-75324865)
	18-624, gnl\|oryCun1\|scaffold_210064 (436331-435827)
	18-624, gnl\|panTro1\|chr11 (8216582-8217148)
	18-624, gnl\|rheMac2\|chr15 (68856486-68855924)
	18-624, gnl\|rn3\|chr5 (94047045-94047536)