Non-Coding RNA Search

Ss1.1-rpigcf0_006875.5

Sequence:


               
               ATTCCTTTCATCTCCATTAAAGGTCACCATCATCTTTTATGTAGATGAGTGTAACAGTCT
TCTCATTGGTCTCTCTGCCTCCAACTTTATTTCCCTCTAATTTATCCACACATGAGAGGA
AGGGCAAGCCCAGTTAAAGGGCAATAGAGATGGTATCCATGAACGCGAACTTTTCAGTAT
GTCCACATGTTCTGAGGTTAAATTTCAACTTCTTTAAATTGGCTTATGAGGCCTTTTAGG
ATCTAACCCCAGCCTACCTTTCCAGCATCACCTCCTCACGCCCTACCTCCTTCCCCCTTA
CTTGGATCTTTCTCAGGTCATTTAATCAGCCTTCTCTCTTGCCTTTGAGACTTCACATAT
GCTGTTCCCAAGTCCACCAGCACCTAGTCAGTGCCTGCCTGCCAAAATGAAATGGGGCTA
CTTCTAGGCTGTTTTTCAGACACAACTAGACAGTCTGTCATCCTGGATGTTATCAGCATC
AGATGATGCAACTTGTAAAGCAGTCTGTCCTTTATTAAAACTCCATTTCATCATCTGCGC
AAAATCTGGCAACATTTCAGCAATGTGTGGAATACTTGAAATGAAATCTCTCATATGCCC
TACGCTTTTAAGAATGTATATATAATTTTCCTTCTCCTTGAATGCTAAGTGAGTAGTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCCTTTCATCTCCATTAAAGGTCACCATCATCTTTTATGTAGATGAGTGTAACAGTCT
TCTCATTGGTCTCTCTGCCTCCAACTTTATTTCCCTCTAATTTATCCACACATGAGAGGA
AGGGCAAGCCCAGTTAAAGGGCAATAGAGATGGTATCCATGAACGCGAACTTTTCAGTAT
GTCCACATGTTCTGAGGTTAAATTTCAACTTCTTTAAATTGGCTTATGAGGCCTTTTAGG
ATCTAACCCCAGCCTACCTTTCCAGCATCACCTCCTCACGCCCTACCTCCTTCCCCCTTA
CTTGGATCTTTCTCAGGTCATTTAATCAGCCTTCTCTCTTGCCTTTGAGACTTCACATAT
GCTGTTCCCAAGTCCACCAGCACCTAGTCAGTGCCTGCCTGCCAAAATGAAATGGGGCTA
CTTCTAGGCTGTTTTTCAGACACAACTAGACAGTCTGTCATCCTGGATGTTATCAGCATC
AGATGATGCAACTTGTAAAGCAGTCTGTCCTTTATTAAAACTCCATTTCATCATCTGCGC
AAAATCTGGCAACATTTCAGCAATGTGTGGAATACTTGAAATGAAATCTCTCATATGCCC
TACGCTTTTAAGAATGTATATATAATTTTCCTTCTCCTTGAATGCTAAGTGAGTAGTGAT

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               10-216, gnl|bosTau2|chr10 (33289706-33289907)
               


               
               226-660, gnl|bosTau2|chr10 (33290678-33291103)
               

               
               226-660, gnl|Hg17|chr15 (60812001-60811564)
               

               
               226-660, gnl|Mm7|chr9 (67359926-67360319)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-216, gnl|bosTau2|chr10 (33289706-33289907)
               


               
               226-660, gnl|bosTau2|chr10 (33290678-33291103)
               

               
               226-660, gnl|Hg17|chr15 (60812001-60811564)
               

               
               226-660, gnl|Mm7|chr9 (67359926-67360319)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	10-216, gnl\|bosTau2\|chr10 (33289706-33289907)

	226-660, gnl\|bosTau2\|chr10 (33290678-33291103)
	226-660, gnl\|Hg17\|chr15 (60812001-60811564)
	226-660, gnl\|Mm7\|chr9 (67359926-67360319)