Non-Coding RNA Search

Ss1.1-rpigcf0_007061.5

Sequence:


               
               CGAATTCGAGAACTAGTCTTGAGTTTTTTTTTTTTTTTTGCTCAGCTGAATGATAATAGT
TTCAAATCACTCTGTATGTTAAAATTATTATCATTCAGCTGAGCAAAAACAAAAACAAAG
GACAACTGTCATTCACCTTTAATTTCCTCTATGCCCACCTTACTTACTCAGACTTTTTCC
TTCCCACCCCCATTGCCTCGACATATTCCTTATCTTTTATTCCTTTCTCTGTCTTGCTGC
TTTCCTGCTCATTATGTGCCTGGTGAGCTCTTCCTCTTCCTCTAAGATACAGCTCAAGTG
CTTTCTCCTTTAAAAAAACTTTCCTGAGGGGTACTCTTATCTTGGCTGTCTCATGATCTC
CTGCACATGCTCCTACCATCACAGTACTTACCAGACAGATGGTATTGTGACCATCTGTTT
ATCCACCCATTTTTCCCATTAGGCAGAGATCTTAACATTTTTTTCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAATTCGAGAACTAGTCTTGAGTTTTTTTTTTTTTTTTGCTCAGCTGAATGATAATAGT
TTCAAATCACTCTGTATGTTAAAATTATTATCATTCAGCTGAGCAAAAACAAAAACAAAG
GACAACTGTCATTCACCTTTAATTTCCTCTATGCCCACCTTACTTACTCAGACTTTTTCC
TTCCCACCCCCATTGCCTCGACATATTCCTTATCTTTTATTCCTTTCTCTGTCTTGCTGC
TTTCCTGCTCATTATGTGCCTGGTGAGCTCTTCCTCTTCCTCTAAGATACAGCTCAAGTG
CTTTCTCCTTTAAAAAAACTTTCCTGAGGGGTACTCTTATCTTGGCTGTCTCATGATCTC
CTGCACATGCTCCTACCATCACAGTACTTACCAGACAGATGGTATTGTGACCATCTGTTT
ATCCACCCATTTTTCCCATTAGGCAGAGATCTTAACATTTTTTTCAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               311-468, - strand, RNAz p=0.966533

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-468, - strand, RNAz p=0.966533

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               55-468, gnl|bosTau2|chr2 (65798914-65798497)
               

               
               55-468, gnl|Hg17|chr2 (221359614-221360032)
               

               
               55-468, gnl|Mm7|chr1 (76878252-76878678)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-468, gnl|bosTau2|chr2 (65798914-65798497)
               

               
               55-468, gnl|Hg17|chr2 (221359614-221360032)
               

               
               55-468, gnl|Mm7|chr1 (76878252-76878678)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.612276)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.612276)

	55-468, gnl\|bosTau2\|chr2 (65798914-65798497)
	55-468, gnl\|Hg17\|chr2 (221359614-221360032)
	55-468, gnl\|Mm7\|chr1 (76878252-76878678)