Non-Coding RNA Search

Ss1.1-rpigcf0_007349.5

Sequence:


               
               CCGCAACCTCATGTTCCTAGTCAGATTCGTTAACCACTGTGCCACGATGGGAACTCCTTC
ATTAGCTTATTTTATGGGTGATTTACAATAGGCTCTGCCTACTTCCTCTTAGGAGAAATC
CTAAAGGAGACTGAAGGCCCATGTTAAAGGCATCAACTTGAATAAATACAGTTTGGCATT
AGGCTGCTGTCTCCTCCAACTACTCACAGTAGTTGCTCAAGGCAGGGAGGGGGCCAAGGA
TTTGCAAATGACAAGGATGTGTTGCCAGAGATTACAACTTCGCTAAAGGACACAAAATCC
AGTGGTCTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCAACCTCATGTTCCTAGTCAGATTCGTTAACCACTGTGCCACGATGGGAACTCCTTC
ATTAGCTTATTTTATGGGTGATTTACAATAGGCTCTGCCTACTTCCTCTTAGGAGAAATC
CTAAAGGAGACTGAAGGCCCATGTTAAAGGCATCAACTTGAATAAATACAGTTTGGCATT
AGGCTGCTGTCTCCTCCAACTACTCACAGTAGTTGCTCAAGGCAGGGAGGGGGCCAAGGA
TTTGCAAATGACAAGGATGTGTTGCCAGAGATTACAACTTCGCTAAAGGACACAAAATCC
AGTGGTCTCTAT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               58-311, gnl|bosTau2|chr21 (7180054-7179793)
               

               
               58-311, gnl|canFam2|chr3 (48964668-48964322)
               

               
               58-311, gnl|dasNov1|scaffold_24925 (414-719)
               

               
               58-311, gnl|echTel1|scaffold_282001 (6145-6444)
               

               
               58-311, gnl|hg17|chr15 (92549712-92550022)
               

               
               58-311, gnl|Hg17|chr15 (92549992-92549733)
               

               
               58-311, gnl|mm7|chr7 (68176917-68176623)
               

               
               58-311, gnl|Mm7|chr7 (68176648-68176895)
               

               
               58-311, gnl|oryCun1|scaffold_12958 (1577-1299)
               

               
               58-311, gnl|panTro1|chr16 (93525084-93525393)
               

               
               58-311, gnl|rheMac2|chr7 (74069937-74070247)
               

               
               58-311, gnl|rn3|chr1 (127464895-127464579)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-311, gnl|bosTau2|chr21 (7180054-7179793)
               

               
               58-311, gnl|canFam2|chr3 (48964668-48964322)
               

               
               58-311, gnl|dasNov1|scaffold_24925 (414-719)
               

               
               58-311, gnl|echTel1|scaffold_282001 (6145-6444)
               

               
               58-311, gnl|hg17|chr15 (92549712-92550022)
               

               
               58-311, gnl|Hg17|chr15 (92549992-92549733)
               

               
               58-311, gnl|mm7|chr7 (68176917-68176623)
               

               
               58-311, gnl|Mm7|chr7 (68176648-68176895)
               

               
               58-311, gnl|oryCun1|scaffold_12958 (1577-1299)
               

               
               58-311, gnl|panTro1|chr16 (93525084-93525393)
               

               
               58-311, gnl|rheMac2|chr7 (74069937-74070247)
               

               
               58-311, gnl|rn3|chr1 (127464895-127464579)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.306138)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)

	58-311, gnl\|bosTau2\|chr21 (7180054-7179793)
	58-311, gnl\|canFam2\|chr3 (48964668-48964322)
	58-311, gnl\|dasNov1\|scaffold_24925 (414-719)
	58-311, gnl\|echTel1\|scaffold_282001 (6145-6444)
	58-311, gnl\|hg17\|chr15 (92549712-92550022)
	58-311, gnl\|Hg17\|chr15 (92549992-92549733)
	58-311, gnl\|mm7\|chr7 (68176917-68176623)
	58-311, gnl\|Mm7\|chr7 (68176648-68176895)
	58-311, gnl\|oryCun1\|scaffold_12958 (1577-1299)
	58-311, gnl\|panTro1\|chr16 (93525084-93525393)
	58-311, gnl\|rheMac2\|chr7 (74069937-74070247)
	58-311, gnl\|rn3\|chr1 (127464895-127464579)