Non-Coding RNA Search

Ss1.1-rpigcf0_007547.5

Sequence:


               
               AGGTTAAAGTAATCTTGCCCAAGAGAGTAGAGACTATCAGAGAGAAGCAGTGGCTCTCAG
CTCAGATGAGCTTTAATAGCAGAGACAGCACCTCTCCTGAAAAACATGAAAGCCTCTTAG
ACATATGTTTGGAATTCATCCTCCTAAGTCATCCTGTGAATTTAGGAATAGCTGAAAATG
TCCCATCATCTGAAGGGGTAAATATACAGCACAAACCATTTAAAAATTATCACGTTAAGA
AAAAAATAAAACGAAAGTGGCAAAGTGTTCCAACTGTCTAGAAACCTTTGCAGATGGTAA
AGGAAAAGCTTTGTCTTTCCTATTATTATTTGCCCTTCAGTTGACATACAGTGCGGAGTT
GCATCAATAGGGTTACAACGGAAACACAGTCATCTCCAGGTTTCCTCTGTTTCGATTCCT
TGATCTTGTTTAAAGAAACAGGCTCAGGGAATGCACAGAAAACAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTTAAAGTAATCTTGCCCAAGAGAGTAGAGACTATCAGAGAGAAGCAGTGGCTCTCAG
CTCAGATGAGCTTTAATAGCAGAGACAGCACCTCTCCTGAAAAACATGAAAGCCTCTTAG
ACATATGTTTGGAATTCATCCTCCTAAGTCATCCTGTGAATTTAGGAATAGCTGAAAATG
TCCCATCATCTGAAGGGGTAAATATACAGCACAAACCATTTAAAAATTATCACGTTAAGA
AAAAAATAAAACGAAAGTGGCAAAGTGTTCCAACTGTCTAGAAACCTTTGCAGATGGTAA
AGGAAAAGCTTTGTCTTTCCTATTATTATTTGCCCTTCAGTTGACATACAGTGCGGAGTT
GCATCAATAGGGTTACAACGGAAACACAGTCATCTCCAGGTTTCCTCTGTTTCGATTCCT
TGATCTTGTTTAAAGAAACAGGCTCAGGGAATGCACAGAAAACAAACT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               348-468, - strand, RNAz p=0.698816
               

               
               378-468, + strand, RNAz p=0.998614

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               348-468, - strand, RNAz p=0.698816
               

               
               378-468, + strand, RNAz p=0.998614

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-468, gnl|bosTau2|chr1 (56239195-56239652)
               

               
               1-468, gnl|canFam2|chr34 (16423557-16424593)
               

               
               1-468, gnl|dasNov1|scaffold_7540 (30097-31084)
               

               
               1-468, gnl|galGal2|chr9 (16691264-16690219)
               

               
               1-468, gnl|hg17|chr3 (181236114-181237145)
               

               
               1-468, gnl|Hg17|chr3 (181236380-181236850)
               

               
               1-468, gnl|loxAfr1|scaffold_35363 (17064-18074)
               

               
               1-468, gnl|mm7|chr3 (32950802-32951687)
               

               
               1-468, gnl|monDom2|scaffold_28 (27372807-27371852)
               

               
               1-468, gnl|oryCun1|scaffold_201656 (43191-42171)
               

               
               1-468, gnl|panTro1|chr2 (184993978-184995009)
               

               
               1-468, gnl|rheMac2|chr2 (106734977-106733948)
               

               
               1-468, gnl|rn3|chr2 (119283867-119284748)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-468, gnl|bosTau2|chr1 (56239195-56239652)
               

               
               1-468, gnl|canFam2|chr34 (16423557-16424593)
               

               
               1-468, gnl|dasNov1|scaffold_7540 (30097-31084)
               

               
               1-468, gnl|galGal2|chr9 (16691264-16690219)
               

               
               1-468, gnl|hg17|chr3 (181236114-181237145)
               

               
               1-468, gnl|Hg17|chr3 (181236380-181236850)
               

               
               1-468, gnl|loxAfr1|scaffold_35363 (17064-18074)
               

               
               1-468, gnl|mm7|chr3 (32950802-32951687)
               

               
               1-468, gnl|monDom2|scaffold_28 (27372807-27371852)
               

               
               1-468, gnl|oryCun1|scaffold_201656 (43191-42171)
               

               
               1-468, gnl|panTro1|chr2 (184993978-184995009)
               

               
               1-468, gnl|rheMac2|chr2 (106734977-106733948)
               

               
               1-468, gnl|rn3|chr2 (119283867-119284748)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.306138)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)

	348-468, - strand, RNAz p=0.698816
	378-468, + strand, RNAz p=0.998614

	1-468, gnl\|bosTau2\|chr1 (56239195-56239652)
	1-468, gnl\|canFam2\|chr34 (16423557-16424593)
	1-468, gnl\|dasNov1\|scaffold_7540 (30097-31084)
	1-468, gnl\|galGal2\|chr9 (16691264-16690219)
	1-468, gnl\|hg17\|chr3 (181236114-181237145)
	1-468, gnl\|Hg17\|chr3 (181236380-181236850)
	1-468, gnl\|loxAfr1\|scaffold_35363 (17064-18074)
	1-468, gnl\|mm7\|chr3 (32950802-32951687)
	1-468, gnl\|monDom2\|scaffold_28 (27372807-27371852)
	1-468, gnl\|oryCun1\|scaffold_201656 (43191-42171)
	1-468, gnl\|panTro1\|chr2 (184993978-184995009)
	1-468, gnl\|rheMac2\|chr2 (106734977-106733948)
	1-468, gnl\|rn3\|chr2 (119283867-119284748)