Non-Coding RNA Search

Ss1.1-rpigcf0_007659.5

Sequence:


               
               GGGCTGCAGGAATCGAATTCTGCTGGTTGATGCGGTAAAACTTTCTCCTCATTTCAACTA
CACATACCTGTTGACCCAACAGAGGGAATTCAATATTTTCCATTTCTATTTGCTGCCCTT
TTCTCTGTGTCTCCCTTTGTGACAGCAACCACGGTGTCCTGGCTGAAAGGCTAATTCTAT
ACATGTAAAGTGCTGCAGGGAAAAAAAAAAAAAAAAGGAAAGAAAAAAACTTGATTTACC
AGCTGCAGGGCAGTTGGAATGCACAGCACCTGGGCGGACTAGCCCTGCCCAGCCCAGGAA
TTTAAAACCACCAACAGGGGCATTTGAATCAGGCGAAAGAAACCAGTGTTGTTCCATATC
CCCGAAGAGCAGAAAGTAGTGGACAAAATTTTGATTGACTCCAACCCAAACTGATTTCAG
AGATAAAAGAGTTTGAAAAGACACCATGGAGTTTTAAAACTTAAGATTGGGCTTCCAAAA
AAAAGCATCTCAGAATGGGAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTGCAGGAATCGAATTCTGCTGGTTGATGCGGTAAAACTTTCTCCTCATTTCAACTA
CACATACCTGTTGACCCAACAGAGGGAATTCAATATTTTCCATTTCTATTTGCTGCCCTT
TTCTCTGTGTCTCCCTTTGTGACAGCAACCACGGTGTCCTGGCTGAAAGGCTAATTCTAT
ACATGTAAAGTGCTGCAGGGAAAAAAAAAAAAAAAAGGAAAGAAAAAAACTTGATTTACC
AGCTGCAGGGCAGTTGGAATGCACAGCACCTGGGCGGACTAGCCCTGCCCAGCCCAGGAA
TTTAAAACCACCAACAGGGGCATTTGAATCAGGCGAAAGAAACCAGTGTTGTTCCATATC
CCCGAAGAGCAGAAAGTAGTGGACAAAATTTTGATTGACTCCAACCCAAACTGATTTCAG
AGATAAAAGAGTTTGAAAAGACACCATGGAGTTTTAAAACTTAAGATTGGGCTTCCAAAA
AAAAGCATCTCAGAATGGGAGGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               175-332, - strand, RNAz p=0.82808

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               175-332, - strand, RNAz p=0.82808

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               21-496, gnl|bosTau2|chr15 (4539909-4540392)
               

               
               21-496, gnl|canFam2|chr21 (8153962-8153450)
               

               
               21-496, gnl|hg17|chr11 (95363822-95364295)
               

               
               21-496, gnl|Hg17|chr11 (95364345-95363880)
               

               
               21-496, gnl|loxAfr1|scaffold_35023 (11680-12150)
               

               
               21-496, gnl|mm7|chr9 (13534540-13534077)
               

               
               21-496, gnl|Mm7|chr9 (13534027-13534492)
               

               
               21-496, gnl|monDom2|scaffold_15 (1148385-1147839)
               

               
               21-496, gnl|oryCun1|scaffold_130439 (2187-1717)
               

               
               21-496, gnl|panTro1|chr9_random (42992221-42991758)
               

               
               21-496, gnl|rheMac2|chr14 (94546950-94547422)
               

               
               21-496, gnl|rn3|chr8 (10515035-10514578)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-496, gnl|bosTau2|chr15 (4539909-4540392)
               

               
               21-496, gnl|canFam2|chr21 (8153962-8153450)
               

               
               21-496, gnl|hg17|chr11 (95363822-95364295)
               

               
               21-496, gnl|Hg17|chr11 (95364345-95363880)
               

               
               21-496, gnl|loxAfr1|scaffold_35023 (11680-12150)
               

               
               21-496, gnl|mm7|chr9 (13534540-13534077)
               

               
               21-496, gnl|Mm7|chr9 (13534027-13534492)
               

               
               21-496, gnl|monDom2|scaffold_15 (1148385-1147839)
               

               
               21-496, gnl|oryCun1|scaffold_130439 (2187-1717)
               

               
               21-496, gnl|panTro1|chr9_random (42992221-42991758)
               

               
               21-496, gnl|rheMac2|chr14 (94546950-94547422)
               

               
               21-496, gnl|rn3|chr8 (10515035-10514578)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.306138)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)

	21-496, gnl\|bosTau2\|chr15 (4539909-4540392)
	21-496, gnl\|canFam2\|chr21 (8153962-8153450)
	21-496, gnl\|hg17\|chr11 (95363822-95364295)
	21-496, gnl\|Hg17\|chr11 (95364345-95363880)
	21-496, gnl\|loxAfr1\|scaffold_35023 (11680-12150)
	21-496, gnl\|mm7\|chr9 (13534540-13534077)
	21-496, gnl\|Mm7\|chr9 (13534027-13534492)
	21-496, gnl\|monDom2\|scaffold_15 (1148385-1147839)
	21-496, gnl\|oryCun1\|scaffold_130439 (2187-1717)
	21-496, gnl\|panTro1\|chr9_random (42992221-42991758)
	21-496, gnl\|rheMac2\|chr14 (94546950-94547422)
	21-496, gnl\|rn3\|chr8 (10515035-10514578)