Non-Coding RNA Search

Ss1.1-rpigcf0_007690.5

Sequence:


               
               CTGCAGGAATCGAATTCCAGCTCCAACTTGGAGATCTTACATGTTTTTATCGAAGAGGGG
TCAGAACTTTTTTTTCTCAAAGGGGCTAGATAGTAAATATTTTCAGCTTTGTGGGCTGTG
TGGTCTCTATTGCAGCTATTCAACTCAGCTGTTGTTGCATGAAAGCAGCAATAAACAATT
TGTAAGTGAATGGGAGTGGCTGTGTTCCAATAAAACTTTACTTACCAAAATAGGCCGCAG
GGCAGATTTGGTCCATAGGCAGTAGTTTGCCAGTATAGATAGATTTTCTAAGACGTATGT
AAAATAAATACCTGATATAACTCATAAACTCATCATAAGCTTGTAATCCTCTAGCAGAAG
TACAGGCATGGCCCATTTTATGGTTCTCTGCTTTATTGTACTTAGCAGATATTGTGTTTT
TTAATAAATTGAAGGTTTGTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAGGAATCGAATTCCAGCTCCAACTTGGAGATCTTACATGTTTTTATCGAAGAGGGG
TCAGAACTTTTTTTTCTCAAAGGGGCTAGATAGTAAATATTTTCAGCTTTGTGGGCTGTG
TGGTCTCTATTGCAGCTATTCAACTCAGCTGTTGTTGCATGAAAGCAGCAATAAACAATT
TGTAAGTGAATGGGAGTGGCTGTGTTCCAATAAAACTTTACTTACCAAAATAGGCCGCAG
GGCAGATTTGGTCCATAGGCAGTAGTTTGCCAGTATAGATAGATTTTCTAAGACGTATGT
AAAATAAATACCTGATATAACTCATAAACTCATCATAAGCTTGTAATCCTCTAGCAGAAG
TACAGGCATGGCCCATTTTATGGTTCTCTGCTTTATTGTACTTAGCAGATATTGTGTTTT
TTAATAAATTGAAGGTTTGTGACT

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               39-444, gnl|bosTau2|chr8 (9157103-9157503)
               

               
               39-444, gnl|canFam2|chr11 (50685158-50685862)
               

               
               39-444, gnl|hg17|chr9 (29762464-29763164)
               

               
               39-444, gnl|panTro1|chr11 (30245196-30245892)
               

               
               39-444, gnl|rheMac2|chr15 (47327321-47326626)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-444, gnl|bosTau2|chr8 (9157103-9157503)
               

               
               39-444, gnl|canFam2|chr11 (50685158-50685862)
               

               
               39-444, gnl|hg17|chr9 (29762464-29763164)
               

               
               39-444, gnl|panTro1|chr11 (30245196-30245892)
               

               
               39-444, gnl|rheMac2|chr15 (47327321-47326626)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	39-444, gnl\|bosTau2\|chr8 (9157103-9157503)
	39-444, gnl\|canFam2\|chr11 (50685158-50685862)
	39-444, gnl\|hg17\|chr9 (29762464-29763164)
	39-444, gnl\|panTro1\|chr11 (30245196-30245892)
	39-444, gnl\|rheMac2\|chr15 (47327321-47326626)