Non-Coding RNA Search

Ss1.1-rpigcf0_008825.5

Sequence:


               
               GACATTGGAAACTGATTCTAAAGTTTCTGTGGAGAGGCAAAGATAGTCAACAAAATATTG
AAGAAGAAAAAGTTAGAGGACTGACACTGACTTCAAGACTTATTATGAAGAAGCTACAGT
GATCAAGGCAGTTTGATAGTGATGAAAGAATCATCAAATAGATCAAAGGAACAAAATAGA
AAGCCCAGAAATAGGTACATATAATGTAATCAACTGGTCTTTAACAGAGATGAAAAGGTA
TTGCAATGGAGCAGAAATAGTCTTTTCAACAAAGAGTTCTCAAAAAACTGGAAATCCATA
CACTCAGAAATTAATCTAGGAGTTCCTGTTGTGGCTCAGCAGGTTAATAACTTAGCATAG
TATCTGAAAGGACGTGAGTTTGATCCCTTGGCCTCACTCAGTGGGTTAAGAGTTCTCATC
ATGAGGAAATGTTTTTTCTATTTCTTTAATTTTGTGTATATATGACATGATGAATATTTA
CTAAGTTTATTGTAGTGATCATTTCATGATGTATGAAAGTCAAATCATTATGCTGCACAC
CTTAAACTTATACAGTGCTGTATGTCAATTAAATCTTAATAAAACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACATTGGAAACTGATTCTAAAGTTTCTGTGGAGAGGCAAAGATAGTCAACAAAATATTG
AAGAAGAAAAAGTTAGAGGACTGACACTGACTTCAAGACTTATTATGAAGAAGCTACAGT
GATCAAGGCAGTTTGATAGTGATGAAAGAATCATCAAATAGATCAAAGGAACAAAATAGA
AAGCCCAGAAATAGGTACATATAATGTAATCAACTGGTCTTTAACAGAGATGAAAAGGTA
TTGCAATGGAGCAGAAATAGTCTTTTCAACAAAGAGTTCTCAAAAAACTGGAAATCCATA
CACTCAGAAATTAATCTAGGAGTTCCTGTTGTGGCTCAGCAGGTTAATAACTTAGCATAG
TATCTGAAAGGACGTGAGTTTGATCCCTTGGCCTCACTCAGTGGGTTAAGAGTTCTCATC
ATGAGGAAATGTTTTTTCTATTTCTTTAATTTTGTGTATATATGACATGATGAATATTTA
CTAAGTTTATTGTAGTGATCATTTCATGATGTATGAAAGTCAAATCATTATGCTGCACAC
CTTAAACTTATACAGTGCTGTATGTCAATTAAATCTTAATAAAACTGG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-319, gnl|bosTau2|chr12 (23943963-23944280)
               


               
               407-588, gnl|bosTau2|chr16 (14084743-14084563)
               


               
               409-586, gnl|bosTau2|chr1 (3746511-3746686)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-319, gnl|bosTau2|chr12 (23943963-23944280)
               


               
               407-588, gnl|bosTau2|chr16 (14084743-14084563)
               


               
               409-586, gnl|bosTau2|chr1 (3746511-3746686)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.306138)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)

	9-319, gnl\|bosTau2\|chr12 (23943963-23944280)

	407-588, gnl\|bosTau2\|chr16 (14084743-14084563)

	409-586, gnl\|bosTau2\|chr1 (3746511-3746686)