Non-Coding RNA Search

Ss1.1-rpigcf0_009751.5

Sequence:


               
               CCCCCTATTATGTGTAAACCATTCTGTCTGAAGTTATTCTCTGAAGATCCCACCAGCGCA
TTCATGATTCTATTCTTAACGTTATTCTGTTGACGAATTCCTGTATTCTGCGGTATCCTG
ATCCTGAAATACTTGGTTTTCAGGTTTACAGAAACCATTCCCTTGGTTTTATCTGTGAGA
TCCTGGTCATTAGCTTGTTTTTTCTTTTATTCTCTCCATGGCTGCAAAGATATTTTATTC
CATTTCTCCAGGGAAACAAGTTTTAATTGCCAATCGACTAGGTATTCAACATGATAAGGT
ATCTAAACCCTGAGAGCTTCCTCCTTTCATTAAAATGTAGATCCAATTTCTTTTCCCTTA
ATGCCACATGCTGTTATTAAACTGAAATAACGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCTATTATGTGTAAACCATTCTGTCTGAAGTTATTCTCTGAAGATCCCACCAGCGCA
TTCATGATTCTATTCTTAACGTTATTCTGTTGACGAATTCCTGTATTCTGCGGTATCCTG
ATCCTGAAATACTTGGTTTTCAGGTTTACAGAAACCATTCCCTTGGTTTTATCTGTGAGA
TCCTGGTCATTAGCTTGTTTTTTCTTTTATTCTCTCCATGGCTGCAAAGATATTTTATTC
CATTTCTCCAGGGAAACAAGTTTTAATTGCCAATCGACTAGGTATTCAACATGATAAGGT
ATCTAAACCCTGAGAGCTTCCTCCTTTCATTAAAATGTAGATCCAATTTCTTTTCCCTTA
ATGCCACATGCTGTTATTAAACTGAAATAACGGAAA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               55-396, gnl|bosTau2|chr16 (1265170-1265506)
               

               
               55-396, gnl|canFam2|chr38 (4899639-4900371)
               

               
               55-396, gnl|echTel1|scaffold_161515 (5826-6655)
               

               
               55-396, gnl|hg17|chr1 (202124403-202125124)
               

               
               55-396, gnl|Hg17|chr1 (202124405-202124760)
               

               
               55-396, gnl|loxAfr1|scaffold_32116 (3602-2887)
               

               
               55-396, gnl|mm7|chr1 (132119803-132119097)
               

               
               55-396, gnl|Mm7|chr1 (132119799-132119450)
               

               
               55-396, gnl|monDom2|scaffold_13 (7068083-7068841)
               

               
               55-396, gnl|oryCun1|scaffold_215153 (47574-46867)
               

               
               55-396, gnl|panTro1|chr1 (185079619-185080347)
               

               
               55-396, gnl|rheMac2|chr1 (164995016-164994284)
               

               
               55-396, gnl|rn3|chr13 (45117409-45116707)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-396, gnl|bosTau2|chr16 (1265170-1265506)
               

               
               55-396, gnl|canFam2|chr38 (4899639-4900371)
               

               
               55-396, gnl|echTel1|scaffold_161515 (5826-6655)
               

               
               55-396, gnl|hg17|chr1 (202124403-202125124)
               

               
               55-396, gnl|Hg17|chr1 (202124405-202124760)
               

               
               55-396, gnl|loxAfr1|scaffold_32116 (3602-2887)
               

               
               55-396, gnl|mm7|chr1 (132119803-132119097)
               

               
               55-396, gnl|Mm7|chr1 (132119799-132119450)
               

               
               55-396, gnl|monDom2|scaffold_13 (7068083-7068841)
               

               
               55-396, gnl|oryCun1|scaffold_215153 (47574-46867)
               

               
               55-396, gnl|panTro1|chr1 (185079619-185080347)
               

               
               55-396, gnl|rheMac2|chr1 (164995016-164994284)
               

               
               55-396, gnl|rn3|chr13 (45117409-45116707)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.306138)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)

	55-396, gnl\|bosTau2\|chr16 (1265170-1265506)
	55-396, gnl\|canFam2\|chr38 (4899639-4900371)
	55-396, gnl\|echTel1\|scaffold_161515 (5826-6655)
	55-396, gnl\|hg17\|chr1 (202124403-202125124)
	55-396, gnl\|Hg17\|chr1 (202124405-202124760)
	55-396, gnl\|loxAfr1\|scaffold_32116 (3602-2887)
	55-396, gnl\|mm7\|chr1 (132119803-132119097)
	55-396, gnl\|Mm7\|chr1 (132119799-132119450)
	55-396, gnl\|monDom2\|scaffold_13 (7068083-7068841)
	55-396, gnl\|oryCun1\|scaffold_215153 (47574-46867)
	55-396, gnl\|panTro1\|chr1 (185079619-185080347)
	55-396, gnl\|rheMac2\|chr1 (164995016-164994284)
	55-396, gnl\|rn3\|chr13 (45117409-45116707)