Non-Coding RNA Search

Ss1.1-rpigcf0_010221.5

Sequence:


               
               AAGAGCCTGAAAAAACCACTTTTTCTTCTCAAGAAACACTGTCAGCATAGGTTGAAAACT
CTTCATTTAGGTGTTTGATATAAGAATCCATTTCTCTGAAACCTAACCATTTACTCATTT
TAAATGCCCATGAAGTTTCAAGTTATTCGCCTTTCTAATTTTCAACACCATAGTTGCATG
TTATAATTTACAGCTTCCCTTGATATAATATTGAAAACATAAGAGCCATAGAGAAATCAT
CACAGACTATTGAGTAAATTCCCTGCTGGTCTGAGATTTCCCTATTTCCTCAAAGTCAAA
TATGAGCAAAGAAGGGCAGTTTTGACAGCTCGAACCTCTTCAGATTCTCAAATACGTGTT
ATTACATTTCAGGTCTGAACAATTTGGGGGAGCAGATTTTAGGATGAATGTCTTGTCACA
CAACATGGAAATTGGTACTTTGGAAGCCTGATGACAATCTACAGCTGACATTTGGACAAA
GGGCTTTCGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGCCTGAAAAAACCACTTTTTCTTCTCAAGAAACACTGTCAGCATAGGTTGAAAACT
CTTCATTTAGGTGTTTGATATAAGAATCCATTTCTCTGAAACCTAACCATTTACTCATTT
TAAATGCCCATGAAGTTTCAAGTTATTCGCCTTTCTAATTTTCAACACCATAGTTGCATG
TTATAATTTACAGCTTCCCTTGATATAATATTGAAAACATAAGAGCCATAGAGAAATCAT
CACAGACTATTGAGTAAATTCCCTGCTGGTCTGAGATTTCCCTATTTCCTCAAAGTCAAA
TATGAGCAAAGAAGGGCAGTTTTGACAGCTCGAACCTCTTCAGATTCTCAAATACGTGTT
ATTACATTTCAGGTCTGAACAATTTGGGGGAGCAGATTTTAGGATGAATGTCTTGTCACA
CAACATGGAAATTGGTACTTTGGAAGCCTGATGACAATCTACAGCTGACATTTGGACAAA
GGGCTTTCGCTG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               3-481, gnl|bosTau2|chr7 (19639504-19639024)
               

               
               3-481, gnl|canFam2|chr11 (21740877-21741664)
               

               
               3-481, gnl|dasNov1|scaffold_71862 (3242-4030)
               

               
               3-481, gnl|echTel1|scaffold_1163 (596-1398)
               

               
               3-481, gnl|hg17|chr5 (129403487-129404320)
               

               
               3-481, gnl|Hg17|chr5 (129404401-129403908)
               

               
               3-481, gnl|loxAfr1|scaffold_5313 (46902-46089)
               

               
               3-481, gnl|mm7|chr18 (59660398-59661135)
               

               
               3-481, gnl|oryCun1|scaffold_162435 (941-175)
               

               
               3-481, gnl|panTro1|chr4 (135761736-135762570)
               

               
               3-481, gnl|rheMac2|chr6 (126459643-126460466)
               

               
               3-481, gnl|rn3|chr18 (55153870-55154601)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-481, gnl|bosTau2|chr7 (19639504-19639024)
               

               
               3-481, gnl|canFam2|chr11 (21740877-21741664)
               

               
               3-481, gnl|dasNov1|scaffold_71862 (3242-4030)
               

               
               3-481, gnl|echTel1|scaffold_1163 (596-1398)
               

               
               3-481, gnl|hg17|chr5 (129403487-129404320)
               

               
               3-481, gnl|Hg17|chr5 (129404401-129403908)
               

               
               3-481, gnl|loxAfr1|scaffold_5313 (46902-46089)
               

               
               3-481, gnl|mm7|chr18 (59660398-59661135)
               

               
               3-481, gnl|oryCun1|scaffold_162435 (941-175)
               

               
               3-481, gnl|panTro1|chr4 (135761736-135762570)
               

               
               3-481, gnl|rheMac2|chr6 (126459643-126460466)
               

               
               3-481, gnl|rn3|chr18 (55153870-55154601)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.612276)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.612276)

	3-481, gnl\|bosTau2\|chr7 (19639504-19639024)
	3-481, gnl\|canFam2\|chr11 (21740877-21741664)
	3-481, gnl\|dasNov1\|scaffold_71862 (3242-4030)
	3-481, gnl\|echTel1\|scaffold_1163 (596-1398)
	3-481, gnl\|hg17\|chr5 (129403487-129404320)
	3-481, gnl\|Hg17\|chr5 (129404401-129403908)
	3-481, gnl\|loxAfr1\|scaffold_5313 (46902-46089)
	3-481, gnl\|mm7\|chr18 (59660398-59661135)
	3-481, gnl\|oryCun1\|scaffold_162435 (941-175)
	3-481, gnl\|panTro1\|chr4 (135761736-135762570)
	3-481, gnl\|rheMac2\|chr6 (126459643-126460466)
	3-481, gnl\|rn3\|chr18 (55153870-55154601)