Non-Coding RNA Search

Ss1.1-rpigcf0_010228.5

Sequence:


               
               CAGGAATTCGAATTCGGTTAAAAAAAGAGAAGCCTGAAAAGTCTGTTCCACTGAGCCTCT
TGCTGGAGCTCCGGAGAAGGTGAAGAACCTTAAACTTGGAAGAACTTAGAGCTCTAAATA
CTCGAACTGATGAATAAATGTGTGTCTCCCAAGCTCTCGGAGTTTAATTGGGAGGTTTGA
ATTAATTAGCCAGTTCCAACTGTTTTTCACCAATTCCAGTCAAAGAACAGCTAAAAGCTT
TTTAAAGAAGCAAATCTTGATTTACCAAGACAGGGGCCTTCCATACTGATCCACACAGTT
GCAGTTTGGAGCCCAATGCTGACATCTGATGACGCTTATCCAGGTTCACAGTGTGGACGT
GTAACAGTCACTTGGTATTTATAACTTTGTTCCTCCTGCCAAAACTATGTTACTTATAAC
CTAAAACAGTTAATTTCTCTCGAAGCTCCTGAATTTGGCAAACGCTTCTTACAAGGAGCC
ATGAGCAAGAGCTGACATTTCCTGTTTCAAGAGGATTTGAGGCTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAATTCGAATTCGGTTAAAAAAAGAGAAGCCTGAAAAGTCTGTTCCACTGAGCCTCT
TGCTGGAGCTCCGGAGAAGGTGAAGAACCTTAAACTTGGAAGAACTTAGAGCTCTAAATA
CTCGAACTGATGAATAAATGTGTGTCTCCCAAGCTCTCGGAGTTTAATTGGGAGGTTTGA
ATTAATTAGCCAGTTCCAACTGTTTTTCACCAATTCCAGTCAAAGAACAGCTAAAAGCTT
TTTAAAGAAGCAAATCTTGATTTACCAAGACAGGGGCCTTCCATACTGATCCACACAGTT
GCAGTTTGGAGCCCAATGCTGACATCTGATGACGCTTATCCAGGTTCACAGTGTGGACGT
GTAACAGTCACTTGGTATTTATAACTTTGTTCCTCCTGCCAAAACTATGTTACTTATAAC
CTAAAACAGTTAATTTCTCTCGAAGCTCCTGAATTTGGCAAACGCTTCTTACAAGGAGCC
ATGAGCAAGAGCTGACATTTCCTGTTTCAAGAGGATTTGAGGCTTGAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               27-528, gnl|bosTau2|chr3 (42735589-42735096)
               

               
               27-528, gnl|Hg17|chr1 (87039165-87038680)
               

               
               27-528, gnl|Mm7|chr3 (144491282-144491714)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-528, gnl|bosTau2|chr3 (42735589-42735096)
               

               
               27-528, gnl|Hg17|chr1 (87039165-87038680)
               

               
               27-528, gnl|Mm7|chr3 (144491282-144491714)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	27-528, gnl\|bosTau2\|chr3 (42735589-42735096)
	27-528, gnl\|Hg17\|chr1 (87039165-87038680)
	27-528, gnl\|Mm7\|chr3 (144491282-144491714)