Non-Coding RNA Search

Ss1.1-rpigcf0_010263.5

Sequence:


               
               TGCAGGAATTCGAATTCCATCCTGTGAAGTACGCAGGTTTTAGTTTTTCATTCTAATGAG
GTATCCTAATGCTGTACACTTATCCACATGCTGGTAGAAGAGGAGAGCACCAAAGCATTA
GGTGTCGCTGGCCCAAAGTTTGCCTCTGATCCATGACAGGCAAGATCTAATCACTTCTCA
AACACTTGCTGTTGGATCACCCTGCTCTACTTGTGATTAATGTGCCCCTGGCCTCTCCTG
CCTCATTTTGTGGCCCTGATTTATGTCTCTGTGTTTTATTGTGAGGAATATGTTTACAAA
AAGTCAGGAAAATTTTAACACTTAAGAAAGAGAAACCAGAAGTGAGATTGTCGAGTGTGC
AGGAGTTATGGTAAGATTTATGTCAGTTTAGCTCAACACTGCTAGTATATTCTGCCATTT
AGCCAGAGTGAATTCTCTCTTGGGTTAAAACAGATATCCAAGGAACTTCCAATTCATTCT
AATTTTTAGATAGAGGATTTTATAGGACTTATGTAAACACAGACTCTGTTACATAAATAC
ATAAAACAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGAATTCGAATTCCATCCTGTGAAGTACGCAGGTTTTAGTTTTTCATTCTAATGAG
GTATCCTAATGCTGTACACTTATCCACATGCTGGTAGAAGAGGAGAGCACCAAAGCATTA
GGTGTCGCTGGCCCAAAGTTTGCCTCTGATCCATGACAGGCAAGATCTAATCACTTCTCA
AACACTTGCTGTTGGATCACCCTGCTCTACTTGTGATTAATGTGCCCCTGGCCTCTCCTG
CCTCATTTTGTGGCCCTGATTTATGTCTCTGTGTTTTATTGTGAGGAATATGTTTACAAA
AAGTCAGGAAAATTTTAACACTTAAGAAAGAGAAACCAGAAGTGAGATTGTCGAGTGTGC
AGGAGTTATGGTAAGATTTATGTCAGTTTAGCTCAACACTGCTAGTATATTCTGCCATTT
AGCCAGAGTGAATTCTCTCTTGGGTTAAAACAGATATCCAAGGAACTTCCAATTCATTCT
AATTTTTAGATAGAGGATTTTATAGGACTTATGTAAACACAGACTCTGTTACATAAATAC
ATAAAACAGAAG

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               17-539, gnl|bosTau2|chr16 (655431-655938)
               

               
               17-539, gnl|canFam2|chr16 (45481394-45480747)
               

               
               17-539, gnl|dasNov1|scaffold_23735 (8022-7403)
               

               
               17-539, gnl|echTel1|scaffold_266880 (5785-5166)
               

               
               17-539, gnl|hg17|chr4 (189946064-189946713)
               

               
               17-539, gnl|Hg17|chr4 (189946063-189946529)
               

               
               17-539, gnl|loxAfr1|scaffold_89682 (86-725)
               

               
               17-539, gnl|mm7|chr8 (41415702-41415067)
               

               
               17-539, gnl|Mm7|chr8 (41415697-41415229)
               

               
               17-539, gnl|oryCun1|scaffold_157279 (4285-3650)
               

               
               17-539, gnl|panTro1|chr3 (208181998-208182651)
               

               
               17-539, gnl|rheMac2|chr5 (180764023-180764696)
               

               
               17-539, gnl|rn3|chr16 (52711171-52710540)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-539, gnl|bosTau2|chr16 (655431-655938)
               

               
               17-539, gnl|canFam2|chr16 (45481394-45480747)
               

               
               17-539, gnl|dasNov1|scaffold_23735 (8022-7403)
               

               
               17-539, gnl|echTel1|scaffold_266880 (5785-5166)
               

               
               17-539, gnl|hg17|chr4 (189946064-189946713)
               

               
               17-539, gnl|Hg17|chr4 (189946063-189946529)
               

               
               17-539, gnl|loxAfr1|scaffold_89682 (86-725)
               

               
               17-539, gnl|mm7|chr8 (41415702-41415067)
               

               
               17-539, gnl|Mm7|chr8 (41415697-41415229)
               

               
               17-539, gnl|oryCun1|scaffold_157279 (4285-3650)
               

               
               17-539, gnl|panTro1|chr3 (208181998-208182651)
               

               
               17-539, gnl|rheMac2|chr5 (180764023-180764696)
               

               
               17-539, gnl|rn3|chr16 (52711171-52710540)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (2.14297)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (2.14297)

	17-539, gnl\|bosTau2\|chr16 (655431-655938)
	17-539, gnl\|canFam2\|chr16 (45481394-45480747)
	17-539, gnl\|dasNov1\|scaffold_23735 (8022-7403)
	17-539, gnl\|echTel1\|scaffold_266880 (5785-5166)
	17-539, gnl\|hg17\|chr4 (189946064-189946713)
	17-539, gnl\|Hg17\|chr4 (189946063-189946529)
	17-539, gnl\|loxAfr1\|scaffold_89682 (86-725)
	17-539, gnl\|mm7\|chr8 (41415702-41415067)
	17-539, gnl\|Mm7\|chr8 (41415697-41415229)
	17-539, gnl\|oryCun1\|scaffold_157279 (4285-3650)
	17-539, gnl\|panTro1\|chr3 (208181998-208182651)
	17-539, gnl\|rheMac2\|chr5 (180764023-180764696)
	17-539, gnl\|rn3\|chr16 (52711171-52710540)