Non-Coding RNA Search

Ss1.1-rpigcf0_010884.5

Sequence:


               
               GCTGCAGGAATCGAATTCGAGAGAGAGAGAGAGAGAACTAGTCTGAGTTTTTTTTGACCT
GGGATTTATGGGGTGTTAAGGCTTGGGATGCATGTTATAAATTCAATTCCATGTGTTTAG
AGGACTTCAGATGATAAGAAATTAACCTGACTAATAGCTGATGTTTGGCTTTTTCATTGG
AAAATAGTTGTAGCTATGAAACCTATTTTTGACAGGAAATACACCAGGGGTAGCCCTTGC
TTTTCTTCCTAGAGATAGGGATCTCTTAGTGCTGTTTACATGAAGCTGTCACTGTTACTT
GCAGAGTCATACGGATTTTACCACTGCTCATAAAACTCCTTTAATGCTAACACTTGTGAA
CATTCTTATTCCTAGGATGATTGGGGGTATATATGTGTGTTTTAAATCACGTTTAATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCAGGAATCGAATTCGAGAGAGAGAGAGAGAGAACTAGTCTGAGTTTTTTTTGACCT
GGGATTTATGGGGTGTTAAGGCTTGGGATGCATGTTATAAATTCAATTCCATGTGTTTAG
AGGACTTCAGATGATAAGAAATTAACCTGACTAATAGCTGATGTTTGGCTTTTTCATTGG
AAAATAGTTGTAGCTATGAAACCTATTTTTGACAGGAAATACACCAGGGGTAGCCCTTGC
TTTTCTTCCTAGAGATAGGGATCTCTTAGTGCTGTTTACATGAAGCTGTCACTGTTACTT
GCAGAGTCATACGGATTTTACCACTGCTCATAAAACTCCTTTAATGCTAACACTTGTGAA
CATTCTTATTCCTAGGATGATTGGGGGTATATATGTGTGTTTTAAATCACGTTTAATGTT

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               49-398, gnl|bosTau2|chr16 (18492381-18492745)
               

               
               49-398, gnl|canFam2|chr7 (37867097-37867418)
               

               
               49-398, gnl|dasNov1|scaffold_3130 (471-792)
               

               
               49-398, gnl|hg17|chr1 (240281923-240282246)
               

               
               49-398, gnl|Hg17|chr1 (240282284-240281933)
               

               
               49-398, gnl|loxAfr1|scaffold_8629 (46736-47053)
               

               
               49-398, gnl|mm7|chr1 (177198709-177199018)
               

               
               49-398, gnl|oryCun1|scaffold_207277 (55878-55556)
               

               
               49-398, gnl|panTro1|chr1 (224277979-224278302)
               

               
               49-398, gnl|rheMac2|chr1 (213300223-213299899)
               

               
               49-398, gnl|rn3|chr13 (93282576-93282875)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-398, gnl|bosTau2|chr16 (18492381-18492745)
               

               
               49-398, gnl|canFam2|chr7 (37867097-37867418)
               

               
               49-398, gnl|dasNov1|scaffold_3130 (471-792)
               

               
               49-398, gnl|hg17|chr1 (240281923-240282246)
               

               
               49-398, gnl|Hg17|chr1 (240282284-240281933)
               

               
               49-398, gnl|loxAfr1|scaffold_8629 (46736-47053)
               

               
               49-398, gnl|mm7|chr1 (177198709-177199018)
               

               
               49-398, gnl|oryCun1|scaffold_207277 (55878-55556)
               

               
               49-398, gnl|panTro1|chr1 (224277979-224278302)
               

               
               49-398, gnl|rheMac2|chr1 (213300223-213299899)
               

               
               49-398, gnl|rn3|chr13 (93282576-93282875)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.306138)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)

	49-398, gnl\|bosTau2\|chr16 (18492381-18492745)
	49-398, gnl\|canFam2\|chr7 (37867097-37867418)
	49-398, gnl\|dasNov1\|scaffold_3130 (471-792)
	49-398, gnl\|hg17\|chr1 (240281923-240282246)
	49-398, gnl\|Hg17\|chr1 (240282284-240281933)
	49-398, gnl\|loxAfr1\|scaffold_8629 (46736-47053)
	49-398, gnl\|mm7\|chr1 (177198709-177199018)
	49-398, gnl\|oryCun1\|scaffold_207277 (55878-55556)
	49-398, gnl\|panTro1\|chr1 (224277979-224278302)
	49-398, gnl\|rheMac2\|chr1 (213300223-213299899)
	49-398, gnl\|rn3\|chr13 (93282576-93282875)