Non-Coding RNA Search

Ss1.1-rpigcf0_013113.5

Sequence:


               
               AATTCTATTCATAATCATTTCACTTCTTTTATGAAAACATGCCTGAAGCTAATATGACAC
AGAGTAATATTTTTCATCCTGGGTAGTGGATGCATTTATGTATGTGTTATTTCCTTAACT
TTTTTGGCTGATAAAACTTTTTTTAGAGCTGAAATAATAAACCAAACCTACTAGCATATT
TGTAAGATGGTGAGTTTGCAGTCAGCCAGGGCACTCTTCAGTTGTATCTCATACCTTCCT
TGAATGATATCTTTTATTTATTAGAGGGAAATGATTTTTTTTTTATTCCTTTAATTTCAA
AGAAAAAGGAGTTTTCCCTAAATAATCCTGGCTTTTTGTCCTAACCTTTACTGTGCCAGA
CTTGAATGTAATTCAATCCTCTTCTCTCTTCGGAGACAGTGGCTTGCATTAAACATGCAT
GCTGCGTTCTCCCTAAATTCATTCTCAGTTTTCTAGATTGTTAAAGAAACCCTTAAATTT
TTTTTTAGCAACAAAATTAGGTTTGTTTATTTTATTCTTTTACAAGTATTTCCTGAGGAT
AGGAGAAAGCTGGAGGTGGAGGTGGTAGTGGCAGTTGTGGTGAACAATTTGGAAGTCCCA
GGTTTAGCCTTAAGTTAGATTTTTCCAATGCTCATTTTCAAGAAATACTGGAGAATGACT
ATATAGCCATAAGATCCCAGATAAGATGGGCTGGAGGATGGTAAATTAAGTAGAAAAAAA
TACCCTTCCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCTATTCATAATCATTTCACTTCTTTTATGAAAACATGCCTGAAGCTAATATGACAC
AGAGTAATATTTTTCATCCTGGGTAGTGGATGCATTTATGTATGTGTTATTTCCTTAACT
TTTTTGGCTGATAAAACTTTTTTTAGAGCTGAAATAATAAACCAAACCTACTAGCATATT
TGTAAGATGGTGAGTTTGCAGTCAGCCAGGGCACTCTTCAGTTGTATCTCATACCTTCCT
TGAATGATATCTTTTATTTATTAGAGGGAAATGATTTTTTTTTTATTCCTTTAATTTCAA
AGAAAAAGGAGTTTTCCCTAAATAATCCTGGCTTTTTGTCCTAACCTTTACTGTGCCAGA
CTTGAATGTAATTCAATCCTCTTCTCTCTTCGGAGACAGTGGCTTGCATTAAACATGCAT
GCTGCGTTCTCCCTAAATTCATTCTCAGTTTTCTAGATTGTTAAAGAAACCCTTAAATTT
TTTTTTAGCAACAAAATTAGGTTTGTTTATTTTATTCTTTTACAAGTATTTCCTGAGGAT
AGGAGAAAGCTGGAGGTGGAGGTGGTAGTGGCAGTTGTGGTGAACAATTTGGAAGTCCCA
GGTTTAGCCTTAAGTTAGATTTTTCCAATGCTCATTTTCAAGAAATACTGGAGAATGACT
ATATAGCCATAAGATCCCAGATAAGATGGGCTGGAGGATGGTAAATTAAGTAGAAAAAAA
TACCCTTCCTCA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               486-730, gnl|bosTau2|chr3 (76953503-76953750)
               

               
               486-730, gnl|canFam2|chr15 (9268906-9268617)
               

               
               486-730, gnl|dasNov1|scaffold_4840 (14835-14581)
               

               
               486-730, gnl|hg17|chr1 (36059766-36060059)
               

               
               486-730, gnl|Hg17|chr1 (36060103-36059882)
               

               
               486-730, gnl|loxAfr1|scaffold_64962 (7796-8097)
               

               
               486-730, gnl|mm7|chr4 (125878833-125878717)
               

               
               486-730, gnl|oryCun1|scaffold_195086 (10662-10944)
               

               
               486-730, gnl|panTro1|chr1 (36890268-36890560)
               

               
               486-730, gnl|rheMac2|chr1 (38767076-38767365)
               

               
               486-730, gnl|rn3|chr5 (145803956-145803833)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               486-730, gnl|bosTau2|chr3 (76953503-76953750)
               

               
               486-730, gnl|canFam2|chr15 (9268906-9268617)
               

               
               486-730, gnl|dasNov1|scaffold_4840 (14835-14581)
               

               
               486-730, gnl|hg17|chr1 (36059766-36060059)
               

               
               486-730, gnl|Hg17|chr1 (36060103-36059882)
               

               
               486-730, gnl|loxAfr1|scaffold_64962 (7796-8097)
               

               
               486-730, gnl|mm7|chr4 (125878833-125878717)
               

               
               486-730, gnl|oryCun1|scaffold_195086 (10662-10944)
               

               
               486-730, gnl|panTro1|chr1 (36890268-36890560)
               

               
               486-730, gnl|rheMac2|chr1 (38767076-38767365)
               

               
               486-730, gnl|rn3|chr5 (145803956-145803833)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	486-730, gnl\|bosTau2\|chr3 (76953503-76953750)
	486-730, gnl\|canFam2\|chr15 (9268906-9268617)
	486-730, gnl\|dasNov1\|scaffold_4840 (14835-14581)
	486-730, gnl\|hg17\|chr1 (36059766-36060059)
	486-730, gnl\|Hg17\|chr1 (36060103-36059882)
	486-730, gnl\|loxAfr1\|scaffold_64962 (7796-8097)
	486-730, gnl\|mm7\|chr4 (125878833-125878717)
	486-730, gnl\|oryCun1\|scaffold_195086 (10662-10944)
	486-730, gnl\|panTro1\|chr1 (36890268-36890560)
	486-730, gnl\|rheMac2\|chr1 (38767076-38767365)
	486-730, gnl\|rn3\|chr5 (145803956-145803833)