Non-Coding RNA Search

Ss1.1-rpigcf0_013848.5

Sequence:


               
               CAGGAATTCGAATTCGGTGGGCAGGATAATCCCCGCCACCACCACCACCACCACCAAAGC
TGTCCACTAGTCCTAATCCCAGAACTTGTGAATATGTTACATGCCAAAGGTAATTAGGGT
TTGTAGATGGAATTATGGTTCCTGATCAGCTGGCTTTGAGATGGGGAGGTTCTTTTGGAT
TACCTGGGTGGGCCAATGTAATCTCAAGGGTCCTTATATGTGGAAGAGGAAGCCAGAGTG
AAAGAACCAGAAAGGTGGCAGCCTGGGAAGGACTCAGTCTGACATTGCCAGCTTTGAAGA
TGGAGGAAGATATCATGAGCCAAAGAATGCAGGCTGTTGTCTAGAAGCTGGAAAAGGAAA
GGAAATGGATGCTTCCCTAGAGCATCCAGAAAGAGTGCAATCCTGCCAATACCTTGATTT
TAGTCCAGTGAGACCCATTTCAGACTTCTGACCTCCCAAACTGTAAAAGAATACATTTGT
GTTGTTTTAACCCACTAAGTATATAATAATTTCTACAGCAGCAATAGG------------
CCTGACAGAGGTAAATAATGCTTTTTAATATCTTATCATTGTCTCCAGTGTAACTATTTC
CATCCCAAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAATTCGAATTCGGTGGGCAGGATAATCCCCGCCACCACCACCACCACCACCAAAGC
TGTCCACTAGTCCTAATCCCAGAACTTGTGAATATGTTACATGCCAAAGGTAATTAGGGT
TTGTAGATGGAATTATGGTTCCTGATCAGCTGGCTTTGAGATGGGGAGGTTCTTTTGGAT
TACCTGGGTGGGCCAATGTAATCTCAAGGGTCCTTATATGTGGAAGAGGAAGCCAGAGTG
AAAGAACCAGAAAGGTGGCAGCCTGGGAAGGACTCAGTCTGACATTGCCAGCTTTGAAGA
TGGAGGAAGATATCATGAGCCAAAGAATGCAGGCTGTTGTCTAGAAGCTGGAAAAGGAAA
GGAAATGGATGCTTCCCTAGAGCATCCAGAAAGAGTGCAATCCTGCCAATACCTTGATTT
TAGTCCAGTGAGACCCATTTCAGACTTCTGACCTCCCAAACTGTAAAAGAATACATTTGT
GTTGTTTTAACCCACTAAGTATATAATAATTTCTACAGCAGCAATAGG------------
CCTGACAGAGGTAAATAATGCTTTTTAATATCTTATCATTGTCTCCAGTGTAACTATTTC
CATCCCAAGACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               97-452, - strand, RNAz p=0.948624
               

               
               100-218, + strand, RNAz p=0.647006

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               97-452, - strand, RNAz p=0.948624
               

               
               100-218, + strand, RNAz p=0.647006

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               37-456, gnl|bosTau2|chrX (27663463-27663882)
               

               
               37-456, gnl|echTel1|scaffold_219489 (1665-1342)
               

               
               37-456, gnl|hg17|chrX (45918542-45918911)
               

               
               37-456, gnl|Hg17|chrX (45918623-45919028)
               

               
               37-456, gnl|panTro1|chrX (47485402-47485773)
               

               
               37-456, gnl|rheMac2|chrX (44141450-44141793)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-456, gnl|bosTau2|chrX (27663463-27663882)
               

               
               37-456, gnl|echTel1|scaffold_219489 (1665-1342)
               

               
               37-456, gnl|hg17|chrX (45918542-45918911)
               

               
               37-456, gnl|Hg17|chrX (45918623-45919028)
               

               
               37-456, gnl|panTro1|chrX (47485402-47485773)
               

               
               37-456, gnl|rheMac2|chrX (44141450-44141793)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	97-452, - strand, RNAz p=0.948624
	100-218, + strand, RNAz p=0.647006

	37-456, gnl\|bosTau2\|chrX (27663463-27663882)
	37-456, gnl\|echTel1\|scaffold_219489 (1665-1342)
	37-456, gnl\|hg17\|chrX (45918542-45918911)
	37-456, gnl\|Hg17\|chrX (45918623-45919028)
	37-456, gnl\|panTro1\|chrX (47485402-47485773)
	37-456, gnl\|rheMac2\|chrX (44141450-44141793)