Non-Coding RNA Search

Ss1.1-rpigcf0_013888.5

Sequence:


               
               ATTCGAATTCCATGCAAGCAGCGTCCGGAGGTGCCAGGATTAATTGCCCAGCGCGGGACA
TGGAGAGTAAGAGCCTGAGTTCAGAGAGGCACACTCTGGGCTGAAGAGAGCAGGGAAGGC
TTAAGGCCTGAGGCAGGCTGAGGTCTGGGGAGGGGAGGGGCTGAGAGAGAGGAGCAGGCT
CCTGGGTGGTGCAGGTTGCTCCCGCCTCTCCACCCGGATTCCCCTCCACCTGGCTCCTCG
CATCTCATCCCTTTCCCTTCCCCCACTCACCCTCTCGTACCAGCCCACTTCCGCCTCTAC
CTCCCACTTCCGCCACCACCTGTATCTTTTCTGCCTTCTACCACCATCCGCTTCCCCACT
GCCGTGCCCCCAGCCCCCTCTACACTTTCCCCGGCTACTGCTACGGCTACGGCTTGCGCT
CAGCCTGCCCACTTACTAGAGGGCAGAAATCACTCTTTCCCTCTAGCCTTCGTTTCTTCA
GCTGTAAAATGCGGCTCTAAAACTGAGTATCTCCTCTCAGCTGGGGACTGCACAGTGGAG
TGGTCAAGTGTGTGGGCTCTCGAGCCAGACCATCTGGATTTGAACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGAATTCCATGCAAGCAGCGTCCGGAGGTGCCAGGATTAATTGCCCAGCGCGGGACA
TGGAGAGTAAGAGCCTGAGTTCAGAGAGGCACACTCTGGGCTGAAGAGAGCAGGGAAGGC
TTAAGGCCTGAGGCAGGCTGAGGTCTGGGGAGGGGAGGGGCTGAGAGAGAGGAGCAGGCT
CCTGGGTGGTGCAGGTTGCTCCCGCCTCTCCACCCGGATTCCCCTCCACCTGGCTCCTCG
CATCTCATCCCTTTCCCTTCCCCCACTCACCCTCTCGTACCAGCCCACTTCCGCCTCTAC
CTCCCACTTCCGCCACCACCTGTATCTTTTCTGCCTTCTACCACCATCCGCTTCCCCACT
GCCGTGCCCCCAGCCCCCTCTACACTTTCCCCGGCTACTGCTACGGCTACGGCTTGCGCT
CAGCCTGCCCACTTACTAGAGGGCAGAAATCACTCTTTCCCTCTAGCCTTCGTTTCTTCA
GCTGTAAAATGCGGCTCTAAAACTGAGTATCTCCTCTCAGCTGGGGACTGCACAGTGGAG
TGGTCAAGTGTGTGGGCTCTCGAGCCAGACCATCTGGATTTGAACCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               72-169, - strand, RNAz p=0.725561

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               72-169, - strand, RNAz p=0.725561

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               10-169, gnl|bosTau2|chr2 (68801570-68801405)
               

               
               10-169, gnl|canFam2|chr37 (29028567-29028961)
               

               
               10-169, gnl|dasNov1|scaffold_119030 (3450-3043)
               

               
               10-169, gnl|echTel1|scaffold_309806 (98993-99359)
               

               
               10-169, gnl|hg17|chr2 (220208312-220208684)
               

               
               10-169, gnl|Hg17|chr2 (220208499-220208669)
               

               
               10-169, gnl|mm7|chr1 (75680487-75680850)
               

               
               10-169, gnl|Mm7|chr1 (75680669-75680838)
               

               
               10-169, gnl|oryCun1|scaffold_193860 (7189-7589)
               

               
               10-169, gnl|panTro1|chr13 (110373225-110373595)
               

               
               10-169, gnl|rheMac2|chr12 (83366611-83366989)
               

               
               10-169, gnl|rn3|chr9 (74879011-74879369)
               


               
               273-587, gnl|bosTau2|chr2 (68801088-68800783)
               

               
               273-587, gnl|Hg17|chr2 (220208770-220209059)
               

               
               273-587, gnl|Mm7|chr1 (75680956-75681278)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-169, gnl|bosTau2|chr2 (68801570-68801405)
               

               
               10-169, gnl|canFam2|chr37 (29028567-29028961)
               

               
               10-169, gnl|dasNov1|scaffold_119030 (3450-3043)
               

               
               10-169, gnl|echTel1|scaffold_309806 (98993-99359)
               

               
               10-169, gnl|hg17|chr2 (220208312-220208684)
               

               
               10-169, gnl|Hg17|chr2 (220208499-220208669)
               

               
               10-169, gnl|mm7|chr1 (75680487-75680850)
               

               
               10-169, gnl|Mm7|chr1 (75680669-75680838)
               

               
               10-169, gnl|oryCun1|scaffold_193860 (7189-7589)
               

               
               10-169, gnl|panTro1|chr13 (110373225-110373595)
               

               
               10-169, gnl|rheMac2|chr12 (83366611-83366989)
               

               
               10-169, gnl|rn3|chr9 (74879011-74879369)
               


               
               273-587, gnl|bosTau2|chr2 (68801088-68800783)
               

               
               273-587, gnl|Hg17|chr2 (220208770-220209059)
               

               
               273-587, gnl|Mm7|chr1 (75680956-75681278)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ctl (0.612276)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.612276)

	10-169, gnl\|bosTau2\|chr2 (68801570-68801405)
	10-169, gnl\|canFam2\|chr37 (29028567-29028961)
	10-169, gnl\|dasNov1\|scaffold_119030 (3450-3043)
	10-169, gnl\|echTel1\|scaffold_309806 (98993-99359)
	10-169, gnl\|hg17\|chr2 (220208312-220208684)
	10-169, gnl\|Hg17\|chr2 (220208499-220208669)
	10-169, gnl\|mm7\|chr1 (75680487-75680850)
	10-169, gnl\|Mm7\|chr1 (75680669-75680838)
	10-169, gnl\|oryCun1\|scaffold_193860 (7189-7589)
	10-169, gnl\|panTro1\|chr13 (110373225-110373595)
	10-169, gnl\|rheMac2\|chr12 (83366611-83366989)
	10-169, gnl\|rn3\|chr9 (74879011-74879369)

	273-587, gnl\|bosTau2\|chr2 (68801088-68800783)
	273-587, gnl\|Hg17\|chr2 (220208770-220209059)
	273-587, gnl\|Mm7\|chr1 (75680956-75681278)