Non-Coding RNA Search

Ss1.1-rpigcf0_014224.5

Sequence:


               
               GAATTCGTTAACAGAAGCCTTCTGGAGGCCATGCCTTCCTTTCCCATAGGGATGCAGCCT
CCAGGCTGACTGCCAACATATTCCTTCTCGAAAGATGCCAATGTTATGCAAGGAGCCTCT
GCACTAAGGATAAACCAGTTAAATGAGGCTCCCAAGGCTTCCAGACATTTTAGTTAGAGA
CCCTGGGGTATCAGCCATGTGGCTGTGCCAGGGGCTGGAGGCCAGAGTAGGGTCTGGGGC
AGGAGGCTTTACCTGTCCTGAGGAGAAATAGAAATAGAATCTCAAAACCTTTGCACTTTT
TTTTTTTTTGTCTTTTTGCCTTTTCTAGGGACGCTTCCCACAGCATAT------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------GCAGTCTTGAAG
CTTCAGTTTACAATATGCCTAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTCGTTAACAGAAGCCTTCTGGAGGCCATGCCTTCCTTTCCCATAGGGATGCAGCCT
CCAGGCTGACTGCCAACATATTCCTTCTCGAAAGATGCCAATGTTATGCAAGGAGCCTCT
GCACTAAGGATAAACCAGTTAAATGAGGCTCCCAAGGCTTCCAGACATTTTAGTTAGAGA
CCCTGGGGTATCAGCCATGTGGCTGTGCCAGGGGCTGGAGGCCAGAGTAGGGTCTGGGGC
AGGAGGCTTTACCTGTCCTGAGGAGAAATAGAAATAGAATCTCAAAACCTTTGCACTTTT
TTTTTTTTTGTCTTTTTGCCTTTTCTAGGGACGCTTCCCACAGCATAT------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------GCAGTCTTGAAG
CTTCAGTTTACAATATGCCTAAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               7-273, + strand, RNAz p=0.993805

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-273, + strand, RNAz p=0.993805

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               161-239, + strand, RNAmicro p=0.951689

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               161-239, + strand, RNAmicro p=0.951689

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-273, gnl|bosTau2|chr11 (15546320-15546052)
               

               
               7-273, gnl|Hg17|chr2 (42249514-42249765)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-273, gnl|bosTau2|chr11 (15546320-15546052)
               

               
               7-273, gnl|Hg17|chr2 (42249514-42249765)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	7-273, gnl\|bosTau2\|chr11 (15546320-15546052)
	7-273, gnl\|Hg17\|chr2 (42249514-42249765)