Non-Coding RNA Search

Ss1.1-rpigcf0_014240.5

Sequence:


               
               AAGGTGTCCTTTCCTAATGGACACTCCTAGTAGAAACTTATCAATCACTGCACAAAGGGA
ATACATTTAGTGAACAGTAGTTGATTGAAGTACCTAGTAGAAACGAAGCATTTGAGGAAA
AGAAGGTTCAAAAAAGTGAGTTTTGATTGAAGCAAGGGAGTCAAAACAGAGCTGAAGCTA
GAGGCAGACCTGGCTGCACAGGGCAGGGGAAGCTCTGATAAATCAAGGCTGTGCATTGAG
GATAGATGGTGAGGCGAAGAATCACCCTACCATTCTCTGTAGACCAGCCCTGACATACAA
CCATCATTTTAAATGTGAAGTGCTACTTGGATCTGATTCTGAGGGTTTCGGTTTTAGGAT
TTCACTGAGATTTTCACTCTGAAAGGTCATTAGAGAGTAGGTTAGTTGGAGATAACTCTG
TCTCCGCTCAGTGTGCTGCTTCTATAAGTGTGCCCTCCTGAAAATAAACTACATCTGGCA
ACCACTTGTGTGAATTACCTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTGTCCTTTCCTAATGGACACTCCTAGTAGAAACTTATCAATCACTGCACAAAGGGA
ATACATTTAGTGAACAGTAGTTGATTGAAGTACCTAGTAGAAACGAAGCATTTGAGGAAA
AGAAGGTTCAAAAAAGTGAGTTTTGATTGAAGCAAGGGAGTCAAAACAGAGCTGAAGCTA
GAGGCAGACCTGGCTGCACAGGGCAGGGGAAGCTCTGATAAATCAAGGCTGTGCATTGAG
GATAGATGGTGAGGCGAAGAATCACCCTACCATTCTCTGTAGACCAGCCCTGACATACAA
CCATCATTTTAAATGTGAAGTGCTACTTGGATCTGATTCTGAGGGTTTCGGTTTTAGGAT
TTCACTGAGATTTTCACTCTGAAAGGTCATTAGAGAGTAGGTTAGTTGGAGATAACTCTG
TCTCCGCTCAGTGTGCTGCTTCTATAAGTGTGCCCTCCTGAAAATAAACTACATCTGGCA
ACCACTTGTGTGAATTACCTAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               211-329, - strand, RNAz p=0.895798

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               211-329, - strand, RNAz p=0.895798

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               306-427, - strand, RNAmicro p=0.985659

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               306-427, - strand, RNAmicro p=0.985659

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-504, gnl|bosTau2|chr2 (41800258-41800761)
               

               
               1-504, gnl|Hg17|chr4 (130674438-130673919)
               

               
               1-504, gnl|Mm7|chr3 (42004061-42003461)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr2 (41800258-41800761)
               

               
               1-504, gnl|Hg17|chr4 (130674438-130673919)
               

               
               1-504, gnl|Mm7|chr3 (42004061-42003461)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.306138)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)

	1-504, gnl\|bosTau2\|chr2 (41800258-41800761)
	1-504, gnl\|Hg17\|chr4 (130674438-130673919)
	1-504, gnl\|Mm7\|chr3 (42004061-42003461)