Non-Coding RNA Search

Ss1.1-rpigcf0_014283.5

Sequence:


               
               CAACATATGTTTTTTCACTTACACAGCTGTGAAAAAATTATATTTATATTTTTGTTGATG
CATAATTTCCAGCCTGAAAACAGAATTGATATTAGCATTAAACCGCCAACAGGTGTCAGT
TCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCCCCTTCTC
TTTCTGGTGAGCTGGAATAATCCTTTCTTTGGCAGGAAGTCAGTATTTTTTCACAGTCAT
TTTTGCGTCCTTAAGAACGCCTTTAAAATTATTTTCTACTTGATGAAACACATCCTCTCC
AGGCTTCATTATTTTCACCCTGGCTGTTATCTGATTGAATATTTCAATCATGAAAAAACT
TGGGAGATTTGAGTCATTTCCTACTCAAAACTGCATGGAACTGTGGTGGGGTGTATTGAT
AATATTTTGAAGGATTTTTTTTGCTAAGAAATAGCTATGTCTTTAAAAACCAATTGCATT
AAACCTGGATGTTGTTAATTTTAGCTATTGATTACAAAGGATCTTGTAGGGAAAAGTGCA
TCAAGCCAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACATATGTTTTTTCACTTACACAGCTGTGAAAAAATTATATTTATATTTTTGTTGATG
CATAATTTCCAGCCTGAAAACAGAATTGATATTAGCATTAAACCGCCAACAGGTGTCAGT
TCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCCCCTTCTC
TTTCTGGTGAGCTGGAATAATCCTTTCTTTGGCAGGAAGTCAGTATTTTTTCACAGTCAT
TTTTGCGTCCTTAAGAACGCCTTTAAAATTATTTTCTACTTGATGAAACACATCCTCTCC
AGGCTTCATTATTTTCACCCTGGCTGTTATCTGATTGAATATTTCAATCATGAAAAAACT
TGGGAGATTTGAGTCATTTCCTACTCAAAACTGCATGGAACTGTGGTGGGGTGTATTGAT
AATATTTTGAAGGATTTTTTTTGCTAAGAAATAGCTATGTCTTTAAAAACCAATTGCATT
AAACCTGGATGTTGTTAATTTTAGCTATTGATTACAAAGGATCTTGTAGGGAAAAGTGCA
TCAAGCCAAACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               243-362, - strand, RNAz p=0.631543

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               243-362, - strand, RNAz p=0.631543

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-121, gnl|bosTau2|chr3 (59928130-59928250)
               

               
               1-121, gnl|canFam2|chr5 (54882561-54882325)
               

               
               1-121, gnl|dasNov1|scaffold_7925 (37871-38102)
               

               
               1-121, gnl|echTel1|scaffold_307397 (2246-2475)
               

               
               1-121, gnl|galGal2|chr8 (26292810-26293019)
               

               
               1-121, gnl|hg17|chr1 (57896583-57896807)
               

               
               1-121, gnl|Hg17|chr1 (57896788-57896667)
               

               
               1-121, gnl|loxAfr1|scaffold_5111 (6420-6648)
               

               
               1-121, gnl|mm7|chr4 (103488635-103488410)
               

               
               1-121, gnl|Mm7|chr4 (103488427-103488549)
               

               
               1-121, gnl|monDom2|scaffold_40 (17878323-17878120)
               

               
               1-121, gnl|oryCun1|scaffold_207567 (47947-47724)
               

               
               1-121, gnl|panTro1|chr1 (56244742-56244966)
               

               
               1-121, gnl|rheMac2|chr1 (60579185-60579411)
               

               
               1-121, gnl|rn3|chr5 (125097844-125097626)
               

               
               1-121, gnl|xenTro1|scaffold_1 (4305147-4304900)
               


               
               168-552, gnl|bosTau2|chr3 (59928250-59928649)
               

               
               168-552, gnl|Hg17|chr1 (57896667-57896290)
               

               
               168-552, gnl|Mm7|chr4 (103488549-103488934)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-121, gnl|bosTau2|chr3 (59928130-59928250)
               

               
               1-121, gnl|canFam2|chr5 (54882561-54882325)
               

               
               1-121, gnl|dasNov1|scaffold_7925 (37871-38102)
               

               
               1-121, gnl|echTel1|scaffold_307397 (2246-2475)
               

               
               1-121, gnl|galGal2|chr8 (26292810-26293019)
               

               
               1-121, gnl|hg17|chr1 (57896583-57896807)
               

               
               1-121, gnl|Hg17|chr1 (57896788-57896667)
               

               
               1-121, gnl|loxAfr1|scaffold_5111 (6420-6648)
               

               
               1-121, gnl|mm7|chr4 (103488635-103488410)
               

               
               1-121, gnl|Mm7|chr4 (103488427-103488549)
               

               
               1-121, gnl|monDom2|scaffold_40 (17878323-17878120)
               

               
               1-121, gnl|oryCun1|scaffold_207567 (47947-47724)
               

               
               1-121, gnl|panTro1|chr1 (56244742-56244966)
               

               
               1-121, gnl|rheMac2|chr1 (60579185-60579411)
               

               
               1-121, gnl|rn3|chr5 (125097844-125097626)
               

               
               1-121, gnl|xenTro1|scaffold_1 (4305147-4304900)
               


               
               168-552, gnl|bosTau2|chr3 (59928250-59928649)
               

               
               168-552, gnl|Hg17|chr1 (57896667-57896290)
               

               
               168-552, gnl|Mm7|chr4 (103488549-103488934)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ctl (0.306138)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)

	1-121, gnl\|bosTau2\|chr3 (59928130-59928250)
	1-121, gnl\|canFam2\|chr5 (54882561-54882325)
	1-121, gnl\|dasNov1\|scaffold_7925 (37871-38102)
	1-121, gnl\|echTel1\|scaffold_307397 (2246-2475)
	1-121, gnl\|galGal2\|chr8 (26292810-26293019)
	1-121, gnl\|hg17\|chr1 (57896583-57896807)
	1-121, gnl\|Hg17\|chr1 (57896788-57896667)
	1-121, gnl\|loxAfr1\|scaffold_5111 (6420-6648)
	1-121, gnl\|mm7\|chr4 (103488635-103488410)
	1-121, gnl\|Mm7\|chr4 (103488427-103488549)
	1-121, gnl\|monDom2\|scaffold_40 (17878323-17878120)
	1-121, gnl\|oryCun1\|scaffold_207567 (47947-47724)
	1-121, gnl\|panTro1\|chr1 (56244742-56244966)
	1-121, gnl\|rheMac2\|chr1 (60579185-60579411)
	1-121, gnl\|rn3\|chr5 (125097844-125097626)
	1-121, gnl\|xenTro1\|scaffold_1 (4305147-4304900)

	168-552, gnl\|bosTau2\|chr3 (59928250-59928649)
	168-552, gnl\|Hg17\|chr1 (57896667-57896290)
	168-552, gnl\|Mm7\|chr4 (103488549-103488934)