Non-Coding RNA Search

Ss1.1-rpigcf0_016269.5

Sequence:


               
               GTAAGCTTTCATATGGTTTTGGCATATGAAGCTTATGACTGTCATAAGCCATACAGAGCC
TGTGGAGTATGGCATGATTTTCATTATGTAATCCAATGAAAATAGACTCTTTAAAATCTA
ACATCATAGTTTTAATATGTATTTCAGTATCTTGACATTAACAGCTAGTACTTAATCATC
ACAACAACCTCCTGTTGACATGAAGCAAGTTGTTGAATGCAATAGAGCATGAATTACAGC
ATTTAATGTAGATGAAAATGAGTGGTACCCAAGCATTCTGAACTCTGCATCAAGGAATGG
ACATGTACATAAGTGGCATCATTTCTACCAATATGTGACTTGAATTTTTTTTTTAAAAAA
AAAAGGAGAATGACTTTCCCAAATTTGCATTAAAAAAGTTTTAAGAATGTTCAAATGGCA
TGCTGTTTTTGTCTGGACTTGAATTTATTAGCAAGTAGTAAAACACTTCTCTAAAGGACC
ATGAATATGTCTGGTTTCATGGGTTCTCTCGTAAAGGGTACTTTTGTGTTTTAAATATAA
ATCAGAACCATGCACGGTAAGTATGAAATATTAGTAGAGCTTTCTCTCACCTTCAGAAGT
ATTGGACAGGTTTTACTATGTTGAACAAGAGATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAGCTTTCATATGGTTTTGGCATATGAAGCTTATGACTGTCATAAGCCATACAGAGCC
TGTGGAGTATGGCATGATTTTCATTATGTAATCCAATGAAAATAGACTCTTTAAAATCTA
ACATCATAGTTTTAATATGTATTTCAGTATCTTGACATTAACAGCTAGTACTTAATCATC
ACAACAACCTCCTGTTGACATGAAGCAAGTTGTTGAATGCAATAGAGCATGAATTACAGC
ATTTAATGTAGATGAAAATGAGTGGTACCCAAGCATTCTGAACTCTGCATCAAGGAATGG
ACATGTACATAAGTGGCATCATTTCTACCAATATGTGACTTGAATTTTTTTTTTAAAAAA
AAAAGGAGAATGACTTTCCCAAATTTGCATTAAAAAAGTTTTAAGAATGTTCAAATGGCA
TGCTGTTTTTGTCTGGACTTGAATTTATTAGCAAGTAGTAAAACACTTCTCTAAAGGACC
ATGAATATGTCTGGTTTCATGGGTTCTCTCGTAAAGGGTACTTTTGTGTTTTAAATATAA
ATCAGAACCATGCACGGTAAGTATGAAATATTAGTAGAGCTTTCTCTCACCTTCAGAAGT
ATTGGACAGGTTTTACTATGTTGAACAAGAGATTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, + strand, RNAz p=0.998899

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.998899

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               1-108, DA900353 SKMUS2 Homo sapiens cDNA clone SKMUS2009132 5', mRNA 
(dbj|DA900353.1|), blast E-value=4.00001e-41, identity=95.37% 
               

               
               1-118, sh1-ok22_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, 
(gb|DY488108.1|), blast E-value=0, identity=97.46%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-108, DA900353 SKMUS2 Homo sapiens cDNA clone SKMUS2009132 5', mRNA 
(dbj|DA900353.1|), blast E-value=4.00001e-41, identity=95.37% 
               

               
               1-118, sh1-ok22_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, 
(gb|DY488108.1|), blast E-value=0, identity=97.46%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-619, gnl|bosTau2|chr5 (39940034-39939421)
               

               
               1-619, gnl|Hg17|chr12 (100580671-100581292)
               

               
               1-619, gnl|Mm7|chr10 (88077807-88077109)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-619, gnl|bosTau2|chr5 (39940034-39939421)
               

               
               1-619, gnl|Hg17|chr12 (100580671-100581292)
               

               
               1-619, gnl|Mm7|chr10 (88077807-88077109)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ctl (0.459207)
               

               
               mas (0.210305)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)
               

               
               mas (0.210305)
               

               
               ldo (0.0970026)

	1-108, DA900353 SKMUS2 Homo sapiens cDNA clone SKMUS2009132 5', mRNA (dbj\|DA900353.1\|), blast E-value=4.00001e-41, identity=95.37%
	1-118, sh1-ok22_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, (gb\|DY488108.1\|), blast E-value=0, identity=97.46%

	1-619, gnl\|bosTau2\|chr5 (39940034-39939421)
	1-619, gnl\|Hg17\|chr12 (100580671-100581292)
	1-619, gnl\|Mm7\|chr10 (88077807-88077109)