Non-Coding RNA Search

Ss1.1-rpigcf0_016374.5

Sequence:


               
               AATTGAATACTAACTAAGCATTCCCCGGTCTGGTGAACAAACTGCACAGACTGAACAAAC
CAGGGAAAATGCGCCTCTGAAGGCTGATGAGTACATTGGCGGTTTAATTTAAAACTGCCC
TGGGGTGGCCATGCCATCTCATCTGGCCTCTTTATGTTTGTGTTATGAGAGAATCAGATC
GATGCCTTCCTTTTATTCTGGGACTGTGGTTTCCAAATAACAGAAGAATGAAGACTCTCC
CCTGATATTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTGAATACTAACTAAGCATTCCCCGGTCTGGTGAACAAACTGCACAGACTGAACAAAC
CAGGGAAAATGCGCCTCTGAAGGCTGATGAGTACATTGGCGGTTTAATTTAAAACTGCCC
TGGGGTGGCCATGCCATCTCATCTGGCCTCTTTATGTTTGTGTTATGAGAGAATCAGATC
GATGCCTTCCTTTTATTCTGGGACTGTGGTTTCCAAATAACAGAAGAATGAAGACTCTCC
CCTGATATTCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               7-165, - strand, RNAz p=0.992302

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-165, - strand, RNAz p=0.992302

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               7-252, gnl|bosTau2|chr4 (62851923-62851677)
               

               
               7-252, gnl|canFam2|chr16 (7055231-7054583)
               

               
               7-252, gnl|hg17|chr7 (145408910-145409572)
               

               
               7-252, gnl|Hg17|chr7 (145409352-145409106)
               

               
               7-252, gnl|mm7|chr6 (45245952-45246607)
               

               
               7-252, gnl|Mm7|chr6 (45246384-45246139)
               

               
               7-252, gnl|monDom2|scaffold_7 (5612593-5613225)
               

               
               7-252, gnl|oryCun1|scaffold_213185 (140904-140266)
               

               
               7-252, gnl|panTro1|chr6 (148238995-148239658)
               

               
               7-252, gnl|rheMac2|chr3 (183600769-183601432)
               

               
               7-252, gnl|rn3|chr4 (73548031-73548682)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-252, gnl|bosTau2|chr4 (62851923-62851677)
               

               
               7-252, gnl|canFam2|chr16 (7055231-7054583)
               

               
               7-252, gnl|hg17|chr7 (145408910-145409572)
               

               
               7-252, gnl|Hg17|chr7 (145409352-145409106)
               

               
               7-252, gnl|mm7|chr6 (45245952-45246607)
               

               
               7-252, gnl|Mm7|chr6 (45246384-45246139)
               

               
               7-252, gnl|monDom2|scaffold_7 (5612593-5613225)
               

               
               7-252, gnl|oryCun1|scaffold_213185 (140904-140266)
               

               
               7-252, gnl|panTro1|chr6 (148238995-148239658)
               

               
               7-252, gnl|rheMac2|chr3 (183600769-183601432)
               

               
               7-252, gnl|rn3|chr4 (73548031-73548682)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (1.22455)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (1.22455)

	7-252, gnl\|bosTau2\|chr4 (62851923-62851677)
	7-252, gnl\|canFam2\|chr16 (7055231-7054583)
	7-252, gnl\|hg17\|chr7 (145408910-145409572)
	7-252, gnl\|Hg17\|chr7 (145409352-145409106)
	7-252, gnl\|mm7\|chr6 (45245952-45246607)
	7-252, gnl\|Mm7\|chr6 (45246384-45246139)
	7-252, gnl\|monDom2\|scaffold_7 (5612593-5613225)
	7-252, gnl\|oryCun1\|scaffold_213185 (140904-140266)
	7-252, gnl\|panTro1\|chr6 (148238995-148239658)
	7-252, gnl\|rheMac2\|chr3 (183600769-183601432)
	7-252, gnl\|rn3\|chr4 (73548031-73548682)