Ss1.1-rpigcf0_017621.5
|
GGAGACGAGGCAGGGCTGCCAGCAGGGAGGAGACGCAACAGGCGGGGGGCATTCCAGGCC
CGGGTCGGACAGGACCCGTCGGGGGTGTCAGGACAGTGGGGTCCCCAGCCGCCACTTCAC
CCACTGCAATTCATTTAGTAGCAGGTACAGGAGCGGCTCTGGCCGGGCCTCTTGAGGCCT
GAGCTGGAGCCTCGAGGGCCGGAGAATGGGAAAGAAGGTGCAGTGTGCCAGACAGACGTC
ACCTGGAGGGAGCACGGCCGTGGGGACGGGCCCCAGAGAGATTTCGGCAGCAGGGAGGCT
GCGCGGGCCCAGCCTGCGGACGTGCGTTCCCACGCAGCACTGCGGCCCAGGGGCTGGCGC
GGCAGGGCCCCCGGTGTCCTTGGTGGCACTGTGCGCCCTCGCCGCTCGCCCCTGGGACTG
GCACGGCAGACAGGACAGCACCCAGGGGAGTCAAGGGCACTGACGAGACCAGACTAGGCG
AGGCGGGTGGGGTGGAATGGATGTGACCTCTGGGGGGAGGGAGGTGGGGACGCAGGCAGG
GGCGAGGCGCCGGAGCCTGGCGGCGAGCGAGGCCAAGGCGGGCCTCTGCGGGTGACAACG
GAGCAGAGATGGGTGACTCTGCGCTCGCACCGGAGACAGCCTCGTCTCCAGTGGGGGTGG
ACACACTGCCAGCACCACAGGCCGGACGCCAGGATGTGCTTGGAGGGACATGACACAGTC
CGGTGTGACGGAGAGGGACAGACGTGACGCCGTCCGGCCTTCCTGAACACTCTCGGCTGG
CCCCGCGGGGGAGCTGCCACACCCAGCGTCTGTTCCTTTGCCTTCCTGAAGGAGCACGTG
CATGACTGCTGCTCTCTGGACCCCAGAACCCTCAAACGACAAGAGATGGTGCTACCCAGC
TCATGCCTGGGCCTTGGACCCGGACTTCTTCAAGTCCTCCTAGCTCTGACTCAAGAATAT
GCTGCATTCTGGAGCCACTACACTACTTGACTCAGGAATCAGCTCTGGAAGGTTGAGCCA
AAGGAACAGACGTCCCACACCACCGGACCAACGGCACCCGCGGGGTTCCCCACCCCCCGC
CCGGCCACTCCACCTCGGCGGCCACCCCCTGCTGCGCCCTGGAGACACCACCAGCCTCCC
TCTCTCCCCTTCCTCCTTTTTTTCCTCTGTCTTTTCTCTTCTCTTCTTTCCTCTCCTTTG
CTCAGAAGACTCGGGGCATCCAGGACTCTGTGTCCCCGTCCTTCTTGAATTAATTTGCAC
TAAGTCGTTTGCACTGGTTTGGAGTCCTGGAACCAGCCCCGGGTCTCGGAGCGGGTGTGT
GAGCTGCCGAGTGGCCTGGCCTCCTCGGCCCGCGCCCCCTCAGCACCTGCCATTGTCCAT
CTCTGTCTGGGGGTGACTGGGTGGGGGCCTGAGTGTGTGGGGCCCCGCCCTCCCCTCTCC
TAGTCTGGAAGCTCCGACCACCGAGCAGACCTCAAACGCTGCACTGAGTGTCCATCTCGT
CATGTGCCCCTCCTCGCCAGGGCCACCCCAGAGCCCTGGACTCATCAATAAACTCAGTTA
CCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GTGCTGGGGGCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAGACGAGGCAGGGCTGCCAGCAGGGAGGAGACGCAACAGGCGGGGGGCATTCCAGGCC
CGGGTCGGACAGGACCCGTCGGGGGTGTCAGGACAGTGGGGTCCCCAGCCGCCACTTCAC
CCACTGCAATTCATTTAGTAGCAGGTACAGGAGCGGCTCTGGCCGGGCCTCTTGAGGCCT
GAGCTGGAGCCTCGAGGGCCGGAGAATGGGAAAGAAGGTGCAGTGTGCCAGACAGACGTC
ACCTGGAGGGAGCACGGCCGTGGGGACGGGCCCCAGAGAGATTTCGGCAGCAGGGAGGCT
GCGCGGGCCCAGCCTGCGGACGTGCGTTCCCACGCAGCACTGCGGCCCAGGGGCTGGCGC
GGCAGGGCCCCCGGTGTCCTTGGTGGCACTGTGCGCCCTCGCCGCTCGCCCCTGGGACTG
GCACGGCAGACAGGACAGCACCCAGGGGAGTCAAGGGCACTGACGAGACCAGACTAGGCG
AGGCGGGTGGGGTGGAATGGATGTGACCTCTGGGGGGAGGGAGGTGGGGACGCAGGCAGG
GGCGAGGCGCCGGAGCCTGGCGGCGAGCGAGGCCAAGGCGGGCCTCTGCGGGTGACAACG
GAGCAGAGATGGGTGACTCTGCGCTCGCACCGGAGACAGCCTCGTCTCCAGTGGGGGTGG
ACACACTGCCAGCACCACAGGCCGGACGCCAGGATGTGCTTGGAGGGACATGACACAGTC
CGGTGTGACGGAGAGGGACAGACGTGACGCCGTCCGGCCTTCCTGAACACTCTCGGCTGG
CCCCGCGGGGGAGCTGCCACACCCAGCGTCTGTTCCTTTGCCTTCCTGAAGGAGCACGTG
CATGACTGCTGCTCTCTGGACCCCAGAACCCTCAAACGACAAGAGATGGTGCTACCCAGC
TCATGCCTGGGCCTTGGACCCGGACTTCTTCAAGTCCTCCTAGCTCTGACTCAAGAATAT
GCTGCATTCTGGAGCCACTACACTACTTGACTCAGGAATCAGCTCTGGAAGGTTGAGCCA
AAGGAACAGACGTCCCACACCACCGGACCAACGGCACCCGCGGGGTTCCCCACCCCCCGC
CCGGCCACTCCACCTCGGCGGCCACCCCCTGCTGCGCCCTGGAGACACCACCAGCCTCCC
TCTCTCCCCTTCCTCCTTTTTTTCCTCTGTCTTTTCTCTTCTCTTCTTTCCTCTCCTTTG
CTCAGAAGACTCGGGGCATCCAGGACTCTGTGTCCCCGTCCTTCTTGAATTAATTTGCAC
TAAGTCGTTTGCACTGGTTTGGAGTCCTGGAACCAGCCCCGGGTCTCGGAGCGGGTGTGT
GAGCTGCCGAGTGGCCTGGCCTCCTCGGCCCGCGCCCCCTCAGCACCTGCCATTGTCCAT
CTCTGTCTGGGGGTGACTGGGTGGGGGCCTGAGTGTGTGGGGCCCCGCCCTCCCCTCTCC
TAGTCTGGAAGCTCCGACCACCGAGCAGACCTCAAACGCTGCACTGAGTGTCCATCTCGT
CATGTGCCCCTCCTCGCCAGGGCCACCCCAGAGCCCTGGACTCATCAATAAACTCAGTTA
CCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GTGCTGGGGGCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1434-1523, + strand, RNAmicro p=0.999996 |
|
199-306, + strand, RNAmicro p=0.923361 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
1434-1523, + strand, RNAmicro p=0.999996 |
|
199-306, + strand, RNAmicro p=0.923361 |
|
21-571, gnl|bosTau2|chr29 (44191901-44191334) |
|
21-571, gnl|Hg17|chr11 (1974976-1974420) |
|
21-571, gnl|Mm7|chr7 (139004815-139004206) |
| |
|
1010-1566, gnl|bosTau2|chr29 (44190553-44189977) |
|
1010-1566, gnl|canFam2|chr18 (49228076-49229001) |
|
1010-1566, gnl|hg17|chr11 (1972984-1973942) |
|
1010-1566, gnl|Hg17|chr11 (1973602-1972982) |
|
1010-1566, gnl|mm7|chr7 (139002813-139003758) |
|
1010-1566, gnl|Mm7|chr7 (139003396-139002811) |
|
1010-1566, gnl|panTro1|chr9 (2168700-2169657) |
|
1010-1566, gnl|rheMac2|chr14 (1906519-1907470) |
|
1010-1566, gnl|rn3|chr1 (203009985-203010960) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
21-571, gnl|bosTau2|chr29 (44191901-44191334) |
|
21-571, gnl|Hg17|chr11 (1974976-1974420) |
|
21-571, gnl|Mm7|chr7 (139004815-139004206) |
| |
|
1010-1566, gnl|bosTau2|chr29 (44190553-44189977) |
|
1010-1566, gnl|canFam2|chr18 (49228076-49229001) |
|
1010-1566, gnl|hg17|chr11 (1972984-1973942) |
|
1010-1566, gnl|Hg17|chr11 (1973602-1972982) |
|
1010-1566, gnl|mm7|chr7 (139002813-139003758) |
|
1010-1566, gnl|Mm7|chr7 (139003396-139002811) |
|
1010-1566, gnl|panTro1|chr9 (2168700-2169657) |
|
1010-1566, gnl|rheMac2|chr14 (1906519-1907470) |
|
1010-1566, gnl|rn3|chr1 (203009985-203010960) |
|
ctl (45.4615) |
|
nms (21.1719) |
|
amn (20.8855) |
|
fli (11.97) |
|
eli (8.34978) |
|
eru (5.7623) |
|
ese (5.5661) |
|
ute (5.44416) |
|
nep (2.57495) |
|
mas (2.52366) |
|
nca (1.50561) |
|
eep (1.47077) |
|
ton (1.404) |
|
elu (1.15607) |
|
eje (0.889504) |
|
eye (0.852515) |
|
nje (0.66368) |
|
pty (0.428143) |
|
nco (0.323468) |
|
cag (0.302389) |
|
nlu (0.191681) |
|
csp (0.161186) |
|
cli (0.152812) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
pla (0.133672) |
|
cov (0.132153) |
|
sug (0.127291) |
|
jej (0.0989218) |
|
ctl (45.4615) |
|
nms (21.1719) |
|
amn (20.8855) |
|
fli (11.97) |
|
eli (8.34978) |
|
eru (5.7623) |
|
ese (5.5661) |
|
ute (5.44416) |
|
nep (2.57495) |
|
mas (2.52366) |
|
nca (1.50561) |
|
eep (1.47077) |
|
ton (1.404) |
|
elu (1.15607) |
|
eje (0.889504) |
|
eye (0.852515) |
|
nje (0.66368) |
|
pty (0.428143) |
|
nco (0.323468) |
|
cag (0.302389) |
|
nlu (0.191681) |
|
csp (0.161186) |
|
cli (0.152812) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
pla (0.133672) |
|
cov (0.132153) |
|
sug (0.127291) |
|
jej (0.0989218) |
