Non-Coding RNA Search

Ss1.1-rpigcf0_018951.5

Sequence:


               
               AGCTCCTCCTCTTTTCCTTGTCTGTACTGGTTGTTCTCCATCCTCTGTTCTCAGATCCAT
TCTCCCTCCTTCTCTGGGCCCCAGGAGGAGGCTGACATCCATGGGTATCAATAGGCTCCT
TGCCCCTTGGCTTTTGATCGGAGGCCTCCAGTGGGGGAGACACAAGCAAGATAAGACAGA
GGGAGAAGAGAGAGGCTGCCCCCTCCTGTCTCAGTGCTGCGGTCTGGAGAGGTCTGCAAT
CCTGTGTGAGCACTGCTTTGGCTGGGAACCCCCCTCCCCAGCCCCTGCCACCTCCACCAC
CCCATCCCATTGCCCAAAGTGCTTCAGAAACACTGCTCTCTCCCCTGCCTCATCAGGCAT
GTGGTGGTCCTCACTTCCCTGGTTGTTGGATCCTTCTCCCTCCCTTGTTGGTGCCTAAGA
CCATGTCCTTCAGTAATCCCTCCATTAAATCATTTTGGAATAAAGTATCACAGCTGCAGG
TGTTTTGTTTCCTGCTGGGACCCTGTCTTCATCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTCCTCCTCTTTTCCTTGTCTGTACTGGTTGTTCTCCATCCTCTGTTCTCAGATCCAT
TCTCCCTCCTTCTCTGGGCCCCAGGAGGAGGCTGACATCCATGGGTATCAATAGGCTCCT
TGCCCCTTGGCTTTTGATCGGAGGCCTCCAGTGGGGGAGACACAAGCAAGATAAGACAGA
GGGAGAAGAGAGAGGCTGCCCCCTCCTGTCTCAGTGCTGCGGTCTGGAGAGGTCTGCAAT
CCTGTGTGAGCACTGCTTTGGCTGGGAACCCCCCTCCCCAGCCCCTGCCACCTCCACCAC
CCCATCCCATTGCCCAAAGTGCTTCAGAAACACTGCTCTCTCCCCTGCCTCATCAGGCAT
GTGGTGGTCCTCACTTCCCTGGTTGTTGGATCCTTCTCCCTCCCTTGTTGGTGCCTAAGA
CCATGTCCTTCAGTAATCCCTCCATTAAATCATTTTGGAATAAAGTATCACAGCTGCAGG
TGTTTTGTTTCCTGCTGGGACCCTGTCTTCATCCTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-149, - strand, RNAz p=0.984773
               

               
               292-384, - strand, RNAz p=0.888266

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-149, - strand, RNAz p=0.984773
               

               
               292-384, - strand, RNAz p=0.888266

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               4-242, gnl|bosTau2|chr17 (33025309-33025073)
               

               
               4-242, gnl|Hg17|chr12 (116251243-116251803)
               


               
               292-508, gnl|bosTau2|chr17 (33025060-33024835)
               

               
               292-508, gnl|canFam2|chr26 (16911720-16911966)
               

               
               292-508, gnl|dasNov1|scaffold_8954 (32155-31919)
               

               
               292-508, gnl|hg17|chr12 (116251785-116252036)
               

               
               292-508, gnl|Hg17|chr12 (116251845-116252065)
               

               
               292-508, gnl|mm7|chr5 (117080238-117080030)
               

               
               292-508, gnl|panTro1|chr10 (119228997-119229248)
               

               
               292-508, gnl|rheMac2|chr11 (118299602-118299853)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-242, gnl|bosTau2|chr17 (33025309-33025073)
               

               
               4-242, gnl|Hg17|chr12 (116251243-116251803)
               


               
               292-508, gnl|bosTau2|chr17 (33025060-33024835)
               

               
               292-508, gnl|canFam2|chr26 (16911720-16911966)
               

               
               292-508, gnl|dasNov1|scaffold_8954 (32155-31919)
               

               
               292-508, gnl|hg17|chr12 (116251785-116252036)
               

               
               292-508, gnl|Hg17|chr12 (116251845-116252065)
               

               
               292-508, gnl|mm7|chr5 (117080238-117080030)
               

               
               292-508, gnl|panTro1|chr10 (119228997-119229248)
               

               
               292-508, gnl|rheMac2|chr11 (118299602-118299853)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ctl (0.765345)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.765345)

	4-149, - strand, RNAz p=0.984773
	292-384, - strand, RNAz p=0.888266

	4-242, gnl\|bosTau2\|chr17 (33025309-33025073)
	4-242, gnl\|Hg17\|chr12 (116251243-116251803)

	292-508, gnl\|bosTau2\|chr17 (33025060-33024835)
	292-508, gnl\|canFam2\|chr26 (16911720-16911966)
	292-508, gnl\|dasNov1\|scaffold_8954 (32155-31919)
	292-508, gnl\|hg17\|chr12 (116251785-116252036)
	292-508, gnl\|Hg17\|chr12 (116251845-116252065)
	292-508, gnl\|mm7\|chr5 (117080238-117080030)
	292-508, gnl\|panTro1\|chr10 (119228997-119229248)
	292-508, gnl\|rheMac2\|chr11 (118299602-118299853)