Non-Coding RNA Search

Ss1.1-rpigcf0_019439.5

Sequence:


               
               ATTCGAATTCGAATTCGAAAGAAAGACGTGAAGAAACCTGCTGCTGCTGCTGCCCCAGCC
CCTGCCCCTGCCCCGGCACCTGCACCTGCACCTGCCCCACCCAAAGAAGAAAAGATTGAC
CTCTCTGCCATTAAGATCGAGTTCTCTAAGGAACAGCAGGATGAATTCAAGGAGGCATTT
CTCCTCTTTGACAGAACAGGCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGAATTCGAATTCGAAAGAAAGACGTGAAGAAACCTGCTGCTGCTGCTGCCCCAGCC
CCTGCCCCTGCCCCGGCACCTGCACCTGCACCTGCCCCACCCAAAGAAGAAAAGATTGAC
CTCTCTGCCATTAAGATCGAGTTCTCTAAGGAACAGCAGGATGAATTCAAGGAGGCATTT
CTCCTCTTTGACAGAACAGGCGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53SD2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53SD2_HUMAN

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               18-135, gnl|bosTau2|chr11 (29527317-29527434)
               

               
               18-135, gnl|canFam2|chr37 (21167578-21167705)
               

               
               18-135, gnl|dasNov1|scaffold_1304 (96470-96594)
               

               
               18-135, gnl|hg17|chr2 (211005118-211005245)
               

               
               18-135, gnl|Hg17|chr2 (211005264-211005141)
               

               
               18-135, gnl|loxAfr1|scaffold_6716 (67794-67930)
               

               
               18-135, gnl|mm7|chr1 (67184475-67184586)
               

               
               18-135, gnl|Mm7|chr1 (67184605-67184500)
               

               
               18-135, gnl|monDom2|scaffold_39 (12489712-12489607)
               

               
               18-135, gnl|oryCun1|scaffold_188898 (569-690)
               

               
               18-135, gnl|panTro1|chr13 (101096713-101096834)
               

               
               18-135, gnl|rheMac2|chr12 (74098691-74098812)
               

               
               18-135, gnl|rn3|chr9 (65884296-65884410)
               

               
               18-135, gnl|xenTro1|scaffold_1343 (62672-62795)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-135, gnl|bosTau2|chr11 (29527317-29527434)
               

               
               18-135, gnl|canFam2|chr37 (21167578-21167705)
               

               
               18-135, gnl|dasNov1|scaffold_1304 (96470-96594)
               

               
               18-135, gnl|hg17|chr2 (211005118-211005245)
               

               
               18-135, gnl|Hg17|chr2 (211005264-211005141)
               

               
               18-135, gnl|loxAfr1|scaffold_6716 (67794-67930)
               

               
               18-135, gnl|mm7|chr1 (67184475-67184586)
               

               
               18-135, gnl|Mm7|chr1 (67184605-67184500)
               

               
               18-135, gnl|monDom2|scaffold_39 (12489712-12489607)
               

               
               18-135, gnl|oryCun1|scaffold_188898 (569-690)
               

               
               18-135, gnl|panTro1|chr13 (101096713-101096834)
               

               
               18-135, gnl|rheMac2|chr12 (74098691-74098812)
               

               
               18-135, gnl|rn3|chr9 (65884296-65884410)
               

               
               18-135, gnl|xenTro1|scaffold_1343 (62672-62795)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.306138)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)

	18-135, gnl\|bosTau2\|chr11 (29527317-29527434)
	18-135, gnl\|canFam2\|chr37 (21167578-21167705)
	18-135, gnl\|dasNov1\|scaffold_1304 (96470-96594)
	18-135, gnl\|hg17\|chr2 (211005118-211005245)
	18-135, gnl\|Hg17\|chr2 (211005264-211005141)
	18-135, gnl\|loxAfr1\|scaffold_6716 (67794-67930)
	18-135, gnl\|mm7\|chr1 (67184475-67184586)
	18-135, gnl\|Mm7\|chr1 (67184605-67184500)
	18-135, gnl\|monDom2\|scaffold_39 (12489712-12489607)
	18-135, gnl\|oryCun1\|scaffold_188898 (569-690)
	18-135, gnl\|panTro1\|chr13 (101096713-101096834)
	18-135, gnl\|rheMac2\|chr12 (74098691-74098812)
	18-135, gnl\|rn3\|chr9 (65884296-65884410)
	18-135, gnl\|xenTro1\|scaffold_1343 (62672-62795)