Non-Coding RNA Search

Ss1.1-rpigcf0_020212.5

Sequence:


               
               ATCGACTTTTATCCTTTAAGAAAATTGCATAAGACTACCTCTCGTTCCTCCTCATCCCAG
GGCCAAGGGGCAGCCCTGCCTCCCAGCTCCTGAGTTGTCCCACGGACTTGAAGGAGGGGC
TTGCATCTCACTCCGCCACTATTTTTTTTTTTTTTTTCACTTCTCTTCTGGAATTATAAA
GCTGAAATTTGAAAGTCACTTTCTGCCAAGACTTTTAAAAAGCATCTTGTGTATGTGTTA
CTGCCAGACTGGGATTGGCTTACCAAATAAAAGGACATTAGAAATCCACAGTCAGATCAA
TCTTTAATGAAAAACCAACAAACATTAAAAGGCTGCCACTAAGCAGCTAGAGGTTGAAGG
CAACTCCAGCTAATTGGCACCCGTAGCGATTTTACTGGCTGCCAAGTTCCAGGGAACTGG
CTCTCAACCCAGCTCCACCAAATTAGGCCAGTTCTCTACAGTGCTTGTGTTGCTGTGTTG
CTAATTAGGGTGATACAGAGCACCCCCATCCAAATGGAGTTTCTTCCAGACATAGATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGACTTTTATCCTTTAAGAAAATTGCATAAGACTACCTCTCGTTCCTCCTCATCCCAG
GGCCAAGGGGCAGCCCTGCCTCCCAGCTCCTGAGTTGTCCCACGGACTTGAAGGAGGGGC
TTGCATCTCACTCCGCCACTATTTTTTTTTTTTTTTTCACTTCTCTTCTGGAATTATAAA
GCTGAAATTTGAAAGTCACTTTCTGCCAAGACTTTTAAAAAGCATCTTGTGTATGTGTTA
CTGCCAGACTGGGATTGGCTTACCAAATAAAAGGACATTAGAAATCCACAGTCAGATCAA
TCTTTAATGAAAAACCAACAAACATTAAAAGGCTGCCACTAAGCAGCTAGAGGTTGAAGG
CAACTCCAGCTAATTGGCACCCGTAGCGATTTTACTGGCTGCCAAGTTCCAGGGAACTGG
CTCTCAACCCAGCTCCACCAAATTAGGCCAGTTCTCTACAGTGCTTGTGTTGCTGTGTTG
CTAATTAGGGTGATACAGAGCACCCCCATCCAAATGGAGTTTCTTCCAGACATAGATGCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               53-153, - strand, RNAz p=0.989399
               

               
               266-460, - strand, RNAz p=0.993421

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-153, - strand, RNAz p=0.989399
               

               
               266-460, - strand, RNAz p=0.993421

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               399-519, + strand, RNAmicro p=0.992803
               

               
               368-489, - strand, RNAmicro p=0.930391

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               399-519, + strand, RNAmicro p=0.992803
               

               
               368-489, - strand, RNAmicro p=0.930391

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               53-540, gnl|bosTau2|chr27 (14914531-14915030)
               

               
               53-540, gnl|Hg17|chr8 (9126044-9125536)
               

               
               53-540, gnl|Mm7|chr8 (34066347-34066781)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-540, gnl|bosTau2|chr27 (14914531-14915030)
               

               
               53-540, gnl|Hg17|chr8 (9126044-9125536)
               

               
               53-540, gnl|Mm7|chr8 (34066347-34066781)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	53-153, - strand, RNAz p=0.989399
	266-460, - strand, RNAz p=0.993421

	399-519, + strand, RNAmicro p=0.992803
	368-489, - strand, RNAmicro p=0.930391

	53-540, gnl\|bosTau2\|chr27 (14914531-14915030)
	53-540, gnl\|Hg17\|chr8 (9126044-9125536)
	53-540, gnl\|Mm7\|chr8 (34066347-34066781)