Non-Coding RNA Search

Ss1.1-rpigcf0_020493.5

Sequence:


               
               CACTGTGTTTGGCTTGAGCAACAAGTTTGATACTGAATTTCCCTCAGTTCTAACAGGGAA
GGTGGCCCCGGAAGAATTTAAGACCAGCATTGGCCGCGTGAATGCATGTTTGAAAAAGGC
TCTCCCAGTCAATGTGAAATGGCTGCTGTGTGGTTGTCTCTGCTGCTGTTGCACCCTGGG
TTGCAGCCTGTGGCCTGTTATTTGTCTCAACAAAAGAACCAGAAGATCTTTTATTGTGTA
ATAATAATGAGTTAAACATTTATTGAGCACTTGCTGTGTGCCAAGTGCTTTACATGATTT
ATTTAATTCTCATAACAATACTGTCCTCATTCTACAGAGAAAGGAACTCAGGGCCAGGAA
GGTGAAGTCCTTTGTCCAACCTTTATCAACACTTTATCACTTAATATAGGTTCCCATCAT
TATTTCAAATAAGTGCAAAGTAAGTGGAGTACTTAAGCAAATATAAATGTAACTGGGCTA
CTTAATTCTTTTCACAAAACCTGAAGCTATGATTTAAAGTTTTTCCAAACCACAGGTATA
TGGGAGAGCTTCTTCTGACCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTGTGTTTGGCTTGAGCAACAAGTTTGATACTGAATTTCCCTCAGTTCTAACAGGGAA
GGTGGCCCCGGAAGAATTTAAGACCAGCATTGGCCGCGTGAATGCATGTTTGAAAAAGGC
TCTCCCAGTCAATGTGAAATGGCTGCTGTGTGGTTGTCTCTGCTGCTGTTGCACCCTGGG
TTGCAGCCTGTGGCCTGTTATTTGTCTCAACAAAAGAACCAGAAGATCTTTTATTGTGTA
ATAATAATGAGTTAAACATTTATTGAGCACTTGCTGTGTGCCAAGTGCTTTACATGATTT
ATTTAATTCTCATAACAATACTGTCCTCATTCTACAGAGAAAGGAACTCAGGGCCAGGAA
GGTGAAGTCCTTTGTCCAACCTTTATCAACACTTTATCACTTAATATAGGTTCCCATCAT
TATTTCAAATAAGTGCAAAGTAAGTGGAGTACTTAAGCAAATATAAATGTAACTGGGCTA
CTTAATTCTTTTCACAAAACCTGAAGCTATGATTTAAAGTTTTTCCAAACCACAGGTATA
TGGGAGAGCTTCTTCTGACCTGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47207236|emb|CAG14464.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47207236|emb|CAG14464.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               60-564, gnl|bosTau2|chr24 (6478853-6478360)
               

               
               60-564, gnl|Hg17|chrX (72587272-72587780)
               

               
               60-564, gnl|Mm7|chrX (98700956-98701433)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-564, gnl|bosTau2|chr24 (6478853-6478360)
               

               
               60-564, gnl|Hg17|chrX (72587272-72587780)
               

               
               60-564, gnl|Mm7|chrX (98700956-98701433)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ctl (0.459207)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)
               

               
               lun (0.150489)

	60-564, gnl\|bosTau2\|chr24 (6478853-6478360)
	60-564, gnl\|Hg17\|chrX (72587272-72587780)
	60-564, gnl\|Mm7\|chrX (98700956-98701433)