Ss1.1-rpigcf0_021010.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTGAAGAAATCTATAAGTTTCAAAGACAGATTCTCAGAGTAAAGGATCGTGACGAGTT TCCAATGATTTTAATTGGTAATAAAGCAGATCTGGATCATCAAAGACAGGTAACGCAGGA AGAAGGACAGCAGTTGGCACGGCAGCTTAAGGTAACATACATGGAGGCATCTGCAAAGAT TAGGATGAATGTGGATCAGGCTTTCCATGAACTTGTCCGGGTTATAAGGAAATTTCAAGA GCAGGAATGTCCTCCTTCACCAGAACCAACACGGAAGGAAAAAGACAAGAAAGGCTGCCA TTGTGTCATTTTCTAAGAATCCCTTGAATTTTAGCTACCAACTGCCAGGAAAAGCCCTCA TCTTCTTCTCTCCTTACGGTTTACATCATGTTGGTACCTTTCTAGCCTTAGACAAATGAT CACCGTGGTAGCCTTAGATCAAGATGCTGGCTAATCTTTTCTATGAAGCTAATCCAATGG TCATTTCAAGACAGATTTAAAGGAAACACTAAGGCTGCTTCAAAGATTATCTGATTCCTT TAATATATATATATATACACATATATATATATATATACACACAGACACATTCTTTTTTAA GGGCTTACTTTTAATAAGGATGAATCAGTTTTGGAACCTAAGTTTTGCCAAGCCGAAGTC ATAGGTTGTGAAATAACTTTTAACTTCTGGAATCATATTGCCTACTGTTAGTCTAAATAG AACCATAGGGAGTTTTTTTTTTAATGTGAGTTTTTGCCTATCTCTAAAAATTTTGATGTC AATTTTAGTTAACCTTAAATACACTGAATTGAATCCATAAAAGTGAGACATCTCAGACCT TTACTGACGCTTACAGACTTTGTTTTCCAGTGGCCAAGATACCAAATGCCTCTTGTATTT ATAGATTAAAAATTGTGTGTAAAGCCTTTACTATTACTCCTATTCTTAAAGATAGTATTC TTTGTGGCCAAATATTTGGACTCATTCTGGACTTAGGCGTTTCACTGTTATTGGTTTTTT AATTTAACTCTTTTCACAGCCATGTTGAGAGTAAAAATAAATAATTTCTGTCTGTCTTCC TTTTCAAGTATTTCTGGATAAGGGATTCAAAAAACTAAAACTTTTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTGAAGAAATCTATAAGTTTCAAAGACAGATTCTCAGAGTAAAGGATCGTGACGAGTT TCCAATGATTTTAATTGGTAATAAAGCAGATCTGGATCATCAAAGACAGGTAACGCAGGA AGAAGGACAGCAGTTGGCACGGCAGCTTAAGGTAACATACATGGAGGCATCTGCAAAGAT TAGGATGAATGTGGATCAGGCTTTCCATGAACTTGTCCGGGTTATAAGGAAATTTCAAGA GCAGGAATGTCCTCCTTCACCAGAACCAACACGGAAGGAAAAAGACAAGAAAGGCTGCCA TTGTGTCATTTTCTAAGAATCCCTTGAATTTTAGCTACCAACTGCCAGGAAAAGCCCTCA TCTTCTTCTCTCCTTACGGTTTACATCATGTTGGTACCTTTCTAGCCTTAGACAAATGAT CACCGTGGTAGCCTTAGATCAAGATGCTGGCTAATCTTTTCTATGAAGCTAATCCAATGG TCATTTCAAGACAGATTTAAAGGAAACACTAAGGCTGCTTCAAAGATTATCTGATTCCTT TAATATATATATATATACACATATATATATATATATACACACAGACACATTCTTTTTTAA GGGCTTACTTTTAATAAGGATGAATCAGTTTTGGAACCTAAGTTTTGCCAAGCCGAAGTC ATAGGTTGTGAAATAACTTTTAACTTCTGGAATCATATTGCCTACTGTTAGTCTAAATAG AACCATAGGGAGTTTTTTTTTTAATGTGAGTTTTTGCCTATCTCTAAAAATTTTGATGTC AATTTTAGTTAACCTTAAATACACTGAATTGAATCCATAAAAGTGAGACATCTCAGACCT TTACTGACGCTTACAGACTTTGTTTTCCAGTGGCCAAGATACCAAATGCCTCTTGTATTT ATAGATTAAAAATTGTGTGTAAAGCCTTTACTATTACTCCTATTCTTAAAGATAGTATTC TTTGTGGCCAAATATTTGGACTCATTCTGGACTTAGGCGTTTCACTGTTATTGGTTTTTT AATTTAACTCTTTTCACAGCCATGTTGAGAGTAAAAATAAATAATTTCTGTCTGTCTTCC TTTTCAAGTATTTCTGGATAAGGGATTCAAAAAACTAAAACTTTTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 464-583, - strand, RNAz p=0.959505 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 464-583, - strand, RNAz p=0.959505 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 1-111, gnl|bosTau2|chr15 (24812901-24812791) | |
| 1-111, gnl|canFam2|chr21 (40244152-40244225) | |
| 1-111, gnl|canFam2|chr21 (40244140-40244245) | |
| 1-111, gnl|canFam2|chr21 (40244136-40244257) | |
| 1-111, gnl|danRer3|chr7 (19998702-19998598) | |
| 1-111, gnl|danRer3|chr8 (31897307-31897426) | |
| 1-111, gnl|dasNov1|scaffold_124349 (2177-2108) | |
| 1-111, gnl|dasNov1|scaffold_192638 (2810-2682) | |
| 1-111, gnl|dasNov1|scaffold_65 (65377-65481) | |
| 1-111, gnl|echTel1|scaffold_320412 (13839-13734) | |
| 1-111, gnl|echTel1|scaffold_320412 (13843-13722) | |
| 1-111, gnl|fr1|chrUn (51506002-51506106) | |
| 1-111, gnl|fr1|chrUn (51505998-51506138) | |
| 1-111, gnl|galGal2|chr5 (7855636-7855740) | |
| 1-111, gnl|galGal2|chr5 (7855633-7855754) | |
| 1-111, gnl|hg17|chr11 (14272589-14272711) | |
| 1-111, gnl|Hg17|chr11 (14272701-14272591) | |
| 1-111, gnl|hg17|chr18 (32112734-32112807) | |
| 1-111, gnl|hg17|chr2 (223368101-223368206) | |
| 1-111, gnl|loxAfr1|scaffold_216 (128616-128543) | |
| 1-111, gnl|loxAfr1|scaffold_216 (128628-128523) | |
| 1-111, gnl|loxAfr1|scaffold_216 (128632-128511) | |
| 1-111, gnl|mm7|chr7 (109974647-109974717) | |
| 1-111, gnl|mm7|chr7 (109974634-109974739) | |
| 1-111, gnl|mm7|chr7 (109974630-109974752) | |
| 1-111, gnl|Mm7|chr7 (109974742-109974632) | |
| 1-111, gnl|monDom2|scaffold_10 (57670512-57670393) | |
| 1-111, gnl|monDom2|scaffold_24 (43098994-43098891) | |
| 1-111, gnl|monDom2|scaffold_6 (24517638-24517582) | |
| 1-111, gnl|oryCun1|scaffold_213735 (263950-264022) | |
| 1-111, gnl|oryCun1|scaffold_213735 (263933-264055) | |
| 1-111, gnl|oryCun1|scaffold_92848 (6057-6159) | |
| 1-111, gnl|panTro1|chr13 (113952268-113952373) | |
| 1-111, gnl|panTro1|chr17 (28087154-28087227) | |
| 1-111, gnl|panTro1|chr9 (14481140-14481262) | |
| 1-111, gnl|rheMac2|chr12 (86555878-86555984) | |
| 1-111, gnl|rheMac2|chr14 (57631843-57631770) | |
| 1-111, gnl|rheMac2|chr14 (57631859-57631733) | |
| 1-111, gnl|rn3|chr1 (172176066-172176188) | |
| 1-111, gnl|rn3|chr10 (47403316-47403388) | |
| 1-111, gnl|rn3|chr10 (47403303-47403408) | |
| 1-111, gnl|tetNig1|chr5 (6663489-6663562) | |
| 1-111, gnl|tetNig1|chr5 (6663477-6663581) | |
| 1-111, gnl|tetNig1|chr5 (6663473-6663611) | |
| 227-1126, gnl|bosTau2|chr15 (24802275-24801384) | |
| 227-1126, gnl|Hg17|chr11 (14257548-14256665) | |
| 227-1126, gnl|Mm7|chr7 (109964347-109963457) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-111, gnl|bosTau2|chr15 (24812901-24812791) | |
| 1-111, gnl|canFam2|chr21 (40244152-40244225) | |
| 1-111, gnl|canFam2|chr21 (40244140-40244245) | |
| 1-111, gnl|canFam2|chr21 (40244136-40244257) | |
| 1-111, gnl|danRer3|chr7 (19998702-19998598) | |
| 1-111, gnl|danRer3|chr8 (31897307-31897426) | |
| 1-111, gnl|dasNov1|scaffold_124349 (2177-2108) | |
| 1-111, gnl|dasNov1|scaffold_192638 (2810-2682) | |
| 1-111, gnl|dasNov1|scaffold_65 (65377-65481) | |
| 1-111, gnl|echTel1|scaffold_320412 (13839-13734) | |
| 1-111, gnl|echTel1|scaffold_320412 (13843-13722) | |
| 1-111, gnl|fr1|chrUn (51506002-51506106) | |
| 1-111, gnl|fr1|chrUn (51505998-51506138) | |
| 1-111, gnl|galGal2|chr5 (7855636-7855740) | |
| 1-111, gnl|galGal2|chr5 (7855633-7855754) | |
| 1-111, gnl|hg17|chr11 (14272589-14272711) | |
| 1-111, gnl|Hg17|chr11 (14272701-14272591) | |
| 1-111, gnl|hg17|chr18 (32112734-32112807) | |
| 1-111, gnl|hg17|chr2 (223368101-223368206) | |
| 1-111, gnl|loxAfr1|scaffold_216 (128616-128543) | |
| 1-111, gnl|loxAfr1|scaffold_216 (128628-128523) | |
| 1-111, gnl|loxAfr1|scaffold_216 (128632-128511) | |
| 1-111, gnl|mm7|chr7 (109974647-109974717) | |
| 1-111, gnl|mm7|chr7 (109974634-109974739) | |
| 1-111, gnl|mm7|chr7 (109974630-109974752) | |
| 1-111, gnl|Mm7|chr7 (109974742-109974632) | |
| 1-111, gnl|monDom2|scaffold_10 (57670512-57670393) | |
| 1-111, gnl|monDom2|scaffold_24 (43098994-43098891) | |
| 1-111, gnl|monDom2|scaffold_6 (24517638-24517582) | |
| 1-111, gnl|oryCun1|scaffold_213735 (263950-264022) | |
| 1-111, gnl|oryCun1|scaffold_213735 (263933-264055) | |
| 1-111, gnl|oryCun1|scaffold_92848 (6057-6159) | |
| 1-111, gnl|panTro1|chr13 (113952268-113952373) | |
| 1-111, gnl|panTro1|chr17 (28087154-28087227) | |
| 1-111, gnl|panTro1|chr9 (14481140-14481262) | |
| 1-111, gnl|rheMac2|chr12 (86555878-86555984) | |
| 1-111, gnl|rheMac2|chr14 (57631843-57631770) | |
| 1-111, gnl|rheMac2|chr14 (57631859-57631733) | |
| 1-111, gnl|rn3|chr1 (172176066-172176188) | |
| 1-111, gnl|rn3|chr10 (47403316-47403388) | |
| 1-111, gnl|rn3|chr10 (47403303-47403408) | |
| 1-111, gnl|tetNig1|chr5 (6663489-6663562) | |
| 1-111, gnl|tetNig1|chr5 (6663477-6663581) | |
| 1-111, gnl|tetNig1|chr5 (6663473-6663611) | |
| 227-1126, gnl|bosTau2|chr15 (24802275-24801384) | |
| 227-1126, gnl|Hg17|chr11 (14257548-14256665) | |
| 227-1126, gnl|Mm7|chr7 (109964347-109963457) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cbl (0.688784) | |
| ctl (0.459207) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| kid (0.259471) | |
| hea (0.204499) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nco (0.161734) | |
| fco (0.157208) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| tra (0.123092) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.688784) | |
| ctl (0.459207) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| kid (0.259471) | |
| hea (0.204499) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nco (0.161734) | |
| fco (0.157208) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| tra (0.123092) |