Non-Coding RNA Search

Ss1.1-rpigcf0_021304.5

Sequence:


               
               TTCCAGACAGACAGACAGACAGAGACAGAGATCTGGAGGTAAAGCTTTTCATATTAATTT
TTTTGACAGCTGAAGTAGTCATCATGGGAAAAATCAGAATGTAATAGACTTCCTTATACA
CATTTTATGGTTTTGTATGATTTTGTAAATTCTGAATCACATATAGAAAGGCACAATCTA
GTCAGTGCTTTGAGTCTAAAGACTTTAATTCATTCCTATTGGAATGGTTCCAGGGAAGTT
GTTTCAAAAATTCCTTGTGCAATCACAGCACTGTTGAGGCTTCATTCTTTTTCCAACTGC
CTGCCAGGCATCTCTACTTACATGCCCCACTGGTGCTTCAGACTTCACCTCACACATCAT
CGCCTGTTTCCAAGCCTGTGCCACTCCTCAGCCACTGTTGCTAGCAATACCATTATAACT
CTTCATTGGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCAGACAGACAGACAGACAGAGACAGAGATCTGGAGGTAAAGCTTTTCATATTAATTT
TTTTGACAGCTGAAGTAGTCATCATGGGAAAAATCAGAATGTAATAGACTTCCTTATACA
CATTTTATGGTTTTGTATGATTTTGTAAATTCTGAATCACATATAGAAAGGCACAATCTA
GTCAGTGCTTTGAGTCTAAAGACTTTAATTCATTCCTATTGGAATGGTTCCAGGGAAGTT
GTTTCAAAAATTCCTTGTGCAATCACAGCACTGTTGAGGCTTCATTCTTTTTCCAACTGC
CTGCCAGGCATCTCTACTTACATGCCCCACTGGTGCTTCAGACTTCACCTCACACATCAT
CGCCTGTTTCCAAGCCTGTGCCACTCCTCAGCCACTGTTGCTAGCAATACCATTATAACT
CTTCATTGGGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               272-402, - strand, RNAz p=0.958447

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-402, - strand, RNAz p=0.958447

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               13-402, gnl|bosTau2|chrX (17507777-17507382)
               

               
               13-402, gnl|Hg17|chrX (107086751-107086338)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-402, gnl|bosTau2|chrX (17507777-17507382)
               

               
               13-402, gnl|Hg17|chrX (107086751-107086338)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	13-402, gnl\|bosTau2\|chrX (17507777-17507382)
	13-402, gnl\|Hg17\|chrX (107086751-107086338)