Non-Coding RNA Search

Ss1.1-rpigcf0_021547.5

Sequence:


               
               GTCTTCTGCAAGGGACTGACCCGCACGCTGCTCATCTTCTTCGACCTGGCCTGGCGGTTG
CGCATCAACTTCCCCTACCTCTACATCGTGGCTTCCATGATGCTCAACGTCCGTCTGCAG
GTTCACATTGAGATCCATTGAACCTTCCTCGGACTGGCAGGTGTGTCCCGGGGCTCAGGG
CACCAGCGAACACACAGCATGAGGGACGGAAGGGGGACTCTTGGTGCCCGCCTCACAGCG
GAGAAGGGAGCGGGCGGTGATTCAGACAGACTACTGTGTGGACTTGAGCCAACGCAGGAG
AGCCCTGGGCCATCCGGTACAACTTCCAGGGTGAGTAAGCCTGCGGTTGCTGCAGATGGA
AGTTCACAGAATGGGGAGATATCACTGGAAATGGAGAAGGATCTGAGTGCGGGCAGCCTT
CTGCTTCGCAGTGGCAGCAGAGCACTTCCACGTGGGCACAAACCAACAAGGGGAAATTCA
GCTTCAGCAGCTGCTCAGCGTGAGACTGTGGGTTTGCTCTTTGCTCCTCTGGAGGAGTGT
TTTGCTGGGGTGTCCTGTGGTGCCGGGGACGCCCAGATGAAGGACCGCCTGCGAGGAGGG
CCCCGGGCCTCCGACAGCTGCAGAGCTCCGAGCCGCCGAGGGGAGCCTCGGGAGTCAGGA
CTACCGTGCCACCCGAAGCCGTCAGAACCCAGCGTTTCTGAGGATGAGCCACCAAGGGCT
CTGCTGGAGAGGCCGGGCTCGGAGTTGCAGCCGCCTTGCCTGCGTTCCGTCCTGTCTGCG
CTGCCACACGCACATCCTCACGTGTTCTTGAATGATGAGAAAAAATGCGTTTCCCCTGGC
CATGCAAAGCCCATGTTTTCGGAGCCAACAGTAGAATACAAGAGAATGCTTTCATGTGTA
ATAAGTACCTCAGATGGTCTGCAGATAACACTGGCCTTACTGGCTCCACAAGCCTTTGAA
TTAGTGAATCTGTTATGCCACAGTTAAGGTACAGGCAGAACAATAAAAATAGATTAATTT
TAAAAGTTGTCCTAGAATGATTTCTTTCGCATTAAGTCTGGATGCAAACAGTGCAGCCGT
GAAGCTCCTGCTTTGGTTTGTATGTCCAGACAGACTTAAAGTAAGTAGAATTTAAACTCG
TGGGAAGCGTAGGGAAGGAGATCGTTGAGTTTTAAATTGTGCATGAAAGACACTGAGGAT
TGGGCAGCCGTTCAAGGAGAATCTTGATATATCCTGTATAAACACCAGGTTAGAACTGAA
AGACAGAACCAAGTTTTTAATATTCTTTGAACACCCATATTCTCAAGGGCTACTGTTCCC
GATCCTGTCTCTCCGACCGTCTCCGACCAGCTAATGGAAATAGATGTTTTTAAAGTCCTC
TCCTCGGCACTTGCTCTGAGCCAGGCTGAGTTGATGGTAAGCTGTTACCACTTCTGAATT
TTGTCAAATAATTTTGGTCAGCAAAATCTGATTGCTCTTCTCACATCCCTTTCCTTCCAC
TGGAAATGCAATTTAAACGGAGGCCCTATGGTGAAAGTTGCAATATTAACCTAACTTTAG
ATAACCCTTTCTCAAACCGGGACCCCTAGCAGTGTTATTCGAAGTGAAAATGAGCTTGAG
CCCACCTGCCGGAGCTCAGTTCCAGAGAGGCCAATCAAGGACTTCCCTTCCGGAAGGATT
CCGGTTTCTAGGAGTCAAGGTCTCTCTTACACTGAGGTTTTTCTGAGATAACTCCTTTTG
TTGTTAGTTGCTACCTTTGATAAAAGGCACTTAAGAGTGTAAGTTTTTAAGGAATCCCAA
AGTAAGACTTAACCATTTTCGGAATTATCGATTGCATATATATATATATATCAGTTTATA
TTGTGTGCTAAAGTACCATGCTGTGTGCTATTTTATTGTTTTGGCAAAATGAAAAATAAA
TCCTGTTCTTTAGCATAATAAATGTCTTATTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTCTGCAAGGGACTGACCCGCACGCTGCTCATCTTCTTCGACCTGGCCTGGCGGTTG
CGCATCAACTTCCCCTACCTCTACATCGTGGCTTCCATGATGCTCAACGTCCGTCTGCAG
GTTCACATTGAGATCCATTGAACCTTCCTCGGACTGGCAGGTGTGTCCCGGGGCTCAGGG
CACCAGCGAACACACAGCATGAGGGACGGAAGGGGGACTCTTGGTGCCCGCCTCACAGCG
GAGAAGGGAGCGGGCGGTGATTCAGACAGACTACTGTGTGGACTTGAGCCAACGCAGGAG
AGCCCTGGGCCATCCGGTACAACTTCCAGGGTGAGTAAGCCTGCGGTTGCTGCAGATGGA
AGTTCACAGAATGGGGAGATATCACTGGAAATGGAGAAGGATCTGAGTGCGGGCAGCCTT
CTGCTTCGCAGTGGCAGCAGAGCACTTCCACGTGGGCACAAACCAACAAGGGGAAATTCA
GCTTCAGCAGCTGCTCAGCGTGAGACTGTGGGTTTGCTCTTTGCTCCTCTGGAGGAGTGT
TTTGCTGGGGTGTCCTGTGGTGCCGGGGACGCCCAGATGAAGGACCGCCTGCGAGGAGGG
CCCCGGGCCTCCGACAGCTGCAGAGCTCCGAGCCGCCGAGGGGAGCCTCGGGAGTCAGGA
CTACCGTGCCACCCGAAGCCGTCAGAACCCAGCGTTTCTGAGGATGAGCCACCAAGGGCT
CTGCTGGAGAGGCCGGGCTCGGAGTTGCAGCCGCCTTGCCTGCGTTCCGTCCTGTCTGCG
CTGCCACACGCACATCCTCACGTGTTCTTGAATGATGAGAAAAAATGCGTTTCCCCTGGC
CATGCAAAGCCCATGTTTTCGGAGCCAACAGTAGAATACAAGAGAATGCTTTCATGTGTA
ATAAGTACCTCAGATGGTCTGCAGATAACACTGGCCTTACTGGCTCCACAAGCCTTTGAA
TTAGTGAATCTGTTATGCCACAGTTAAGGTACAGGCAGAACAATAAAAATAGATTAATTT
TAAAAGTTGTCCTAGAATGATTTCTTTCGCATTAAGTCTGGATGCAAACAGTGCAGCCGT
GAAGCTCCTGCTTTGGTTTGTATGTCCAGACAGACTTAAAGTAAGTAGAATTTAAACTCG
TGGGAAGCGTAGGGAAGGAGATCGTTGAGTTTTAAATTGTGCATGAAAGACACTGAGGAT
TGGGCAGCCGTTCAAGGAGAATCTTGATATATCCTGTATAAACACCAGGTTAGAACTGAA
AGACAGAACCAAGTTTTTAATATTCTTTGAACACCCATATTCTCAAGGGCTACTGTTCCC
GATCCTGTCTCTCCGACCGTCTCCGACCAGCTAATGGAAATAGATGTTTTTAAAGTCCTC
TCCTCGGCACTTGCTCTGAGCCAGGCTGAGTTGATGGTAAGCTGTTACCACTTCTGAATT
TTGTCAAATAATTTTGGTCAGCAAAATCTGATTGCTCTTCTCACATCCCTTTCCTTCCAC
TGGAAATGCAATTTAAACGGAGGCCCTATGGTGAAAGTTGCAATATTAACCTAACTTTAG
ATAACCCTTTCTCAAACCGGGACCCCTAGCAGTGTTATTCGAAGTGAAAATGAGCTTGAG
CCCACCTGCCGGAGCTCAGTTCCAGAGAGGCCAATCAAGGACTTCCCTTCCGGAAGGATT
CCGGTTTCTAGGAGTCAAGGTCTCTCTTACACTGAGGTTTTTCTGAGATAACTCCTTTTG
TTGTTAGTTGCTACCTTTGATAAAAGGCACTTAAGAGTGTAAGTTTTTAAGGAATCCCAA
AGTAAGACTTAACCATTTTCGGAATTATCGATTGCATATATATATATATATCAGTTTATA
TTGTGTGCTAAAGTACCATGCTGTGTGCTATTTTATTGTTTTGGCAAAATGAAAAATAAA
TCCTGTTCTTTAGCATAATAAATGTCTTATTTTAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|14249304|ref|NP_116095.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14249304|ref|NP_116095.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               118-1954, gnl|bosTau2|chr25 (36775088-36773269)
               

               
               118-1954, gnl|Hg17|chr7 (6144109-6142282)
               

               
               118-1954, gnl|Mm7|chr5 (142595034-142596803)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-1954, gnl|bosTau2|chr25 (36775088-36773269)
               

               
               118-1954, gnl|Hg17|chr7 (6144109-6142282)
               

               
               118-1954, gnl|Mm7|chr5 (142595034-142596803)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               ctl (1.37762)
               

               
               pla (0.66836)
               

               
               ldo (0.291008)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (1.37762)
               

               
               pla (0.66836)
               

               
               ldo (0.291008)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	118-1954, gnl\|bosTau2\|chr25 (36775088-36773269)
	118-1954, gnl\|Hg17\|chr7 (6144109-6142282)
	118-1954, gnl\|Mm7\|chr5 (142595034-142596803)

	ctl (1.37762)
	pla (0.66836)
	ldo (0.291008)
	tes (0.207814)
	hea (0.204499)
	jej (0.197844)
	col (0.195008)
	sto (0.179824)
	gul (0.177588)
	eye (0.170503)
	tbr (0.154178)
	liv (0.146284)
	csk (0.140746)
	lyg (0.133103)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	med (0.116252)
	spc (0.113366)