Non-Coding RNA Search

Ss1.1-rpigcf0_021567.5

Sequence:


               
               GTACACGGTAGAGGCTCGGGGACCTGTGTGCATTTGGAAGTTCTTTTTCTGTGCGGTTGC
CTCCTTGGCCCCACAGCTTCCAGCCAGCTCAGCCTCCCTGAACTTTGGTGTCTGTCTCCT
CCACTCACCAAAACTATGCTCTGCTCGCAGCTCTCTGCTCTGCTTGCCTGACCAGGAGCT
CCCCTCGCTGGAGCCCCGGCCTTCAGGGGCCCAGTCCTGAACTGCCTGGGGTGGCACATT
CCCTGGAAATAGATTTCTCTTGTATTTTGTCCAGTTTTTAATTTATGACTGGAGGCTAAA
GCCAGTTGCAGTTCCTCTTCATGGCCAGAAGAAGAAAGAAATAGCCGCCGTTTTGTTTAA
GTAAACCTTCTAAATGTTTTCTAGGCAAAATGTCGTGACTTCGAGAACATGCTGTGGTTT
GAGTCCTTGCTGTTTTACGGTTGTGAAGAGCGAGAGCAAGAAAAAGATGATGTAGACGTT
GCACTGTTACCTACTATTGTGGAAAAGGTGATTCTTCCCAAACTAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACACGGTAGAGGCTCGGGGACCTGTGTGCATTTGGAAGTTCTTTTTCTGTGCGGTTGC
CTCCTTGGCCCCACAGCTTCCAGCCAGCTCAGCCTCCCTGAACTTTGGTGTCTGTCTCCT
CCACTCACCAAAACTATGCTCTGCTCGCAGCTCTCTGCTCTGCTTGCCTGACCAGGAGCT
CCCCTCGCTGGAGCCCCGGCCTTCAGGGGCCCAGTCCTGAACTGCCTGGGGTGGCACATT
CCCTGGAAATAGATTTCTCTTGTATTTTGTCCAGTTTTTAATTTATGACTGGAGGCTAAA
GCCAGTTGCAGTTCCTCTTCATGGCCAGAAGAAGAAAGAAATAGCCGCCGTTTTGTTTAA
GTAAACCTTCTAAATGTTTTCTAGGCAAAATGTCGTGACTTCGAGAACATGCTGTGGTTT
GAGTCCTTGCTGTTTTACGGTTGTGAAGAGCGAGAGCAAGAAAAAGATGATGTAGACGTT
GCACTGTTACCTACTATTGTGGAAAAGGTGATTCTTCCCAAACTAACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               118-228, - strand, RNAz p=0.701999

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-228, - strand, RNAz p=0.701999

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-528, gnl|bosTau2|chr1 (441452-440919)
               

               
               1-528, gnl|Hg17|chr21 (33041661-33039757)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr1 (441452-440919)
               

               
               1-528, gnl|Hg17|chr21 (33041661-33039757)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (2.75524)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (2.75524)

	1-528, gnl\|bosTau2\|chr1 (441452-440919)
	1-528, gnl\|Hg17\|chr21 (33041661-33039757)