Non-Coding RNA Search

Ss1.1-rpigcf0_021577.5

Sequence:


               
               GTGTTTCTTGATTTATCCAAGAACTTAGCAAAGATATTATCAAGGGGATTCAAGCTTGTG
GTGGGTAGATGGTTCGGTTTGCCATGTCCTTTAAAACATGAATTCACTCAGAATAGCACA
GCTCATTATAGGTCTAAATTTTTATGGTAGTTTGGGAAAAAAATACAGCTGGACATGTGT
GCACCATATTTATCTAATTTAATTTCATAAAGCACCTCATTACACCTTGAATATCTTAAA
GAGTCCATCAAACTAGCTTTTGGGTTAAGAAGATGTAACACAAACAGTTAATAGGACTGT
CAAAAAAAGAAAAAAACTTTGATCACCTATTTATGGCTTTAAAGTCAAGCATCTAAGCGA
GTCCAGTATAGGGACAGCCAGCTAGCTAGCTAGGAAGACAGAGTTACAGACATAGACAGT
TGGATAGAGAGAATGAGAAGAGAAAGAGTGATTCATTCCTGGCTGAGATGGACTAAGTAC
TTTCCAATCCATCTGTCTTATTCAGTGCAGCTTTAAAACCTGGAAAGGATGAAGTTCCCA
CTGTGGATCAGCAGGTTACAAACGTGACTAGTATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTTTCTTGATTTATCCAAGAACTTAGCAAAGATATTATCAAGGGGATTCAAGCTTGTG
GTGGGTAGATGGTTCGGTTTGCCATGTCCTTTAAAACATGAATTCACTCAGAATAGCACA
GCTCATTATAGGTCTAAATTTTTATGGTAGTTTGGGAAAAAAATACAGCTGGACATGTGT
GCACCATATTTATCTAATTTAATTTCATAAAGCACCTCATTACACCTTGAATATCTTAAA
GAGTCCATCAAACTAGCTTTTGGGTTAAGAAGATGTAACACAAACAGTTAATAGGACTGT
CAAAAAAAGAAAAAAACTTTGATCACCTATTTATGGCTTTAAAGTCAAGCATCTAAGCGA
GTCCAGTATAGGGACAGCCAGCTAGCTAGCTAGGAAGACAGAGTTACAGACATAGACAGT
TGGATAGAGAGAATGAGAAGAGAAAGAGTGATTCATTCCTGGCTGAGATGGACTAAGTAC
TTTCCAATCCATCTGTCTTATTCAGTGCAGCTTTAAAACCTGGAAAGGATGAAGTTCCCA
CTGTGGATCAGCAGGTTACAAACGTGACTAGTATTC

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               23-394, gnl|bosTau2|chr23 (29120165-29120529)
               

               
               23-394, gnl|canFam2|chr35 (23988242-23988673)
               

               
               23-394, gnl|dasNov1|scaffold_582 (88845-89293)
               

               
               23-394, gnl|hg17|chr6 (22736867-22737413)
               

               
               23-394, gnl|Hg17|chr6 (22737484-22737093)
               

               
               23-394, gnl|loxAfr1|scaffold_1569 (111648-110961)
               

               
               23-394, gnl|panTro1|chr5 (23155215-23155761)
               

               
               23-394, gnl|rheMac2|chr4 (22599688-22600188)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-394, gnl|bosTau2|chr23 (29120165-29120529)
               

               
               23-394, gnl|canFam2|chr35 (23988242-23988673)
               

               
               23-394, gnl|dasNov1|scaffold_582 (88845-89293)
               

               
               23-394, gnl|hg17|chr6 (22736867-22737413)
               

               
               23-394, gnl|Hg17|chr6 (22737484-22737093)
               

               
               23-394, gnl|loxAfr1|scaffold_1569 (111648-110961)
               

               
               23-394, gnl|panTro1|chr5 (23155215-23155761)
               

               
               23-394, gnl|rheMac2|chr4 (22599688-22600188)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	23-394, gnl\|bosTau2\|chr23 (29120165-29120529)
	23-394, gnl\|canFam2\|chr35 (23988242-23988673)
	23-394, gnl\|dasNov1\|scaffold_582 (88845-89293)
	23-394, gnl\|hg17\|chr6 (22736867-22737413)
	23-394, gnl\|Hg17\|chr6 (22737484-22737093)
	23-394, gnl\|loxAfr1\|scaffold_1569 (111648-110961)
	23-394, gnl\|panTro1\|chr5 (23155215-23155761)
	23-394, gnl\|rheMac2\|chr4 (22599688-22600188)