Non-Coding RNA Search

Ss1.1-rpigcf0_021615.5

Sequence:


               
               AGGAATTCGAATTCCCTATAAATAGAATAATTGGAAAATCAAAATTGATTACTGACTATC
TTATATTTGTAGGTGAAAGTGTTAAGAACTGAGGTTGATAAATGAGATTATTAGTTATGA
GTTTGGTTGGCGTGTGAATAATATTCTTCTCATGGGAATCACAAACTTATAGGTCATTCA
GTCACTCAACATTTTAAAGTCATGTATTTATTTCAGATCGTTTTAGAATTTTTATTAACA
GTATGGAAGTGATTCTGTTTTATTCCAATGAAGTCTTTTTTTGCAAATATTTAAAAAAGA
TAAAGCTCATTTTCATTAGTCTAAATTAAGAAGGAGAAGTATATTTGCAATCAGTATACT
ATGTACCGTTAAATGTTGTGTAACCAATAAAACCACATTTGAATCGTTTAATGAAGAAAT
TATTAAATGAGGTGTATCACATTATAAAGCAATCTACTCTTAAGCACCAAGTTTTAATTC
ATGGATATGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAATTCGAATTCCCTATAAATAGAATAATTGGAAAATCAAAATTGATTACTGACTATC
TTATATTTGTAGGTGAAAGTGTTAAGAACTGAGGTTGATAAATGAGATTATTAGTTATGA
GTTTGGTTGGCGTGTGAATAATATTCTTCTCATGGGAATCACAAACTTATAGGTCATTCA
GTCACTCAACATTTTAAAGTCATGTATTTATTTCAGATCGTTTTAGAATTTTTATTAACA
GTATGGAAGTGATTCTGTTTTATTCCAATGAAGTCTTTTTTTGCAAATATTTAAAAAAGA
TAAAGCTCATTTTCATTAGTCTAAATTAAGAAGGAGAAGTATATTTGCAATCAGTATACT
ATGTACCGTTAAATGTTGTGTAACCAATAAAACCACATTTGAATCGTTTAATGAAGAAAT
TATTAAATGAGGTGTATCACATTATAAAGCAATCTACTCTTAAGCACCAAGTTTTAATTC
ATGGATATGTAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               15-492, gnl|bosTau2|chr6 (9792504-9792039)
               

               
               15-492, gnl|canFam2|chr32 (23118402-23118937)
               

               
               15-492, gnl|dasNov1|scaffold_133525 (2192-2748)
               

               
               15-492, gnl|hg17|chr4 (99115660-99116191)
               

               
               15-492, gnl|Hg17|chr4 (99116291-99115847)
               

               
               15-492, gnl|mm7|chr3 (139311476-139310937)
               

               
               15-492, gnl|Mm7|chr3 (139310836-139311291)
               

               
               15-492, gnl|oryCun1|scaffold_211469 (10001-9469)
               

               
               15-492, gnl|panTro1|chr3 (115452235-115452765)
               

               
               15-492, gnl|rheMac2|chr5 (90785986-90786517)
               

               
               15-492, gnl|rn3|chr2 (237025022-237024483)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-492, gnl|bosTau2|chr6 (9792504-9792039)
               

               
               15-492, gnl|canFam2|chr32 (23118402-23118937)
               

               
               15-492, gnl|dasNov1|scaffold_133525 (2192-2748)
               

               
               15-492, gnl|hg17|chr4 (99115660-99116191)
               

               
               15-492, gnl|Hg17|chr4 (99116291-99115847)
               

               
               15-492, gnl|mm7|chr3 (139311476-139310937)
               

               
               15-492, gnl|Mm7|chr3 (139310836-139311291)
               

               
               15-492, gnl|oryCun1|scaffold_211469 (10001-9469)
               

               
               15-492, gnl|panTro1|chr3 (115452235-115452765)
               

               
               15-492, gnl|rheMac2|chr5 (90785986-90786517)
               

               
               15-492, gnl|rn3|chr2 (237025022-237024483)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.306138)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)

	15-492, gnl\|bosTau2\|chr6 (9792504-9792039)
	15-492, gnl\|canFam2\|chr32 (23118402-23118937)
	15-492, gnl\|dasNov1\|scaffold_133525 (2192-2748)
	15-492, gnl\|hg17\|chr4 (99115660-99116191)
	15-492, gnl\|Hg17\|chr4 (99116291-99115847)
	15-492, gnl\|mm7\|chr3 (139311476-139310937)
	15-492, gnl\|Mm7\|chr3 (139310836-139311291)
	15-492, gnl\|oryCun1\|scaffold_211469 (10001-9469)
	15-492, gnl\|panTro1\|chr3 (115452235-115452765)
	15-492, gnl\|rheMac2\|chr5 (90785986-90786517)
	15-492, gnl\|rn3\|chr2 (237025022-237024483)