Non-Coding RNA Search

Ss1.1-rpigcf0_021652.5

Sequence:


               
               ATTCAATAGTCTCATCAGACCAATCTGATGTTTCCTTCTAAAGTTGCTCCAGTTCCACTA
GATTTTGGAGATGTGGCAATCAAACTTCTAATGCATAGATGCCATAATTTTGTGTGTGTG
TATTATAAAGAAACCCACCTTCCTGATAGTTTCCAGAGTTTACCTGGTCTCTTTAATTGC
CTAGAATTGCATAAATTAAGACATCTACATTGACTCTGGATCTCCTTTCAGGCTCCTACA
TTCATACTCAACTAGAGCAAAAATAACTTTAGGAGATTATGGTCAACACTCTGCCTTTAC
ACAAGGAAGTAAAGTGATTTGTCCAAGTAGCAGGGCCTGAAAATAGAACCCAGATTTCTG
ACCCAGAGCCAAGAGTTATTTCCATCATACCCCTCTGCCTGCTTCACAAGAAACGGTGCA
GAGCCTATTTTTGATTGCTTTTCTCTAATGCACTAAATTTTACTTGACTATGCTAAAAAT
TAATATGCTACTTTTTGCCTTGACACACAATCTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAATAGTCTCATCAGACCAATCTGATGTTTCCTTCTAAAGTTGCTCCAGTTCCACTA
GATTTTGGAGATGTGGCAATCAAACTTCTAATGCATAGATGCCATAATTTTGTGTGTGTG
TATTATAAAGAAACCCACCTTCCTGATAGTTTCCAGAGTTTACCTGGTCTCTTTAATTGC
CTAGAATTGCATAAATTAAGACATCTACATTGACTCTGGATCTCCTTTCAGGCTCCTACA
TTCATACTCAACTAGAGCAAAAATAACTTTAGGAGATTATGGTCAACACTCTGCCTTTAC
ACAAGGAAGTAAAGTGATTTGTCCAAGTAGCAGGGCCTGAAAATAGAACCCAGATTTCTG
ACCCAGAGCCAAGAGTTATTTCCATCATACCCCTCTGCCTGCTTCACAAGAAACGGTGCA
GAGCCTATTTTTGATTGCTTTTCTCTAATGCACTAAATTTTACTTGACTATGCTAAAAAT
TAATATGCTACTTTTTGCCTTGACACACAATCTAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               162-281, - strand, RNAz p=0.677735

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-281, - strand, RNAz p=0.677735

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               9-515, gnl|bosTau2|chr14 (41368339-41368841)
               

               
               9-515, gnl|Hg17|chr8 (98034017-98033512)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-515, gnl|bosTau2|chr14 (41368339-41368841)
               

               
               9-515, gnl|Hg17|chr8 (98034017-98033512)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (1.07148)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (1.07148)

	9-515, gnl\|bosTau2\|chr14 (41368339-41368841)
	9-515, gnl\|Hg17\|chr8 (98034017-98033512)