Non-Coding RNA Search

Ss1.1-rpigfc0_017381.5

Sequence:


               
               TTTTTTTTCAATGTATATGTGAAAGGAAAGTGGTATGTCTATTAAACATTGATTCTCCAG
TTGATTTTACATGTGTTCTCTAATGATTTTGGTGAAGTTAAGTATTCCAATATGAATATA
CTGTAGTGTTTTGGTCAACAGTGTGGGCTCTGGACAGAGGCTGACCAGTCGTAATCAAAT
CCTTAATTACACTATGCTCAAACTTCAGTCTTTGAACGTCACTATGTTCATTGAATAAGA
TCATTCCATAGTTTTTAAATAAGAATGAAATGACAGTGAGTATGTAGAACAATGCCTAAA
ATATATTTTAGGAATAAAACAAATATTTGTTAGTATTATGGCAAGTTAAATGATGTATTA
CTGTCAGATCTGAATACCATCAGCAAATTTCCTTATTTTCCATTATTTAAATTTTATGTC
TATTTCTTTCACAGAGACTAACCTCCTGAAAGCACTATAACATATATGGGAAAATGTTTG
GAACTTGGATTATGAGTGTGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTCAATGTATATGTGAAAGGAAAGTGGTATGTCTATTAAACATTGATTCTCCAG
TTGATTTTACATGTGTTCTCTAATGATTTTGGTGAAGTTAAGTATTCCAATATGAATATA
CTGTAGTGTTTTGGTCAACAGTGTGGGCTCTGGACAGAGGCTGACCAGTCGTAATCAAAT
CCTTAATTACACTATGCTCAAACTTCAGTCTTTGAACGTCACTATGTTCATTGAATAAGA
TCATTCCATAGTTTTTAAATAAGAATGAAATGACAGTGAGTATGTAGAACAATGCCTAAA
ATATATTTTAGGAATAAAACAAATATTTGTTAGTATTATGGCAAGTTAAATGATGTATTA
CTGTCAGATCTGAATACCATCAGCAAATTTCCTTATTTTCCATTATTTAAATTTTATGTC
TATTTCTTTCACAGAGACTAACCTCCTGAAAGCACTATAACATATATGGGAAAATGTTTG
GAACTTGGATTATGAGTGTGATGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               165-283, - strand, RNAz p=0.951425

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-283, - strand, RNAz p=0.951425

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               9-283, gnl|bosTau2|chr4 (5834207-5833938)
               

               
               9-283, gnl|canFam2|chr14 (30284012-30284199)
               

               
               9-283, gnl|hg17|chr7 (12299392-12299575)
               

               
               9-283, gnl|Hg17|chr7 (12299411-12299678)
               

               
               9-283, gnl|loxAfr1|scaffold_5397 (33551-33363)
               

               
               9-283, gnl|mm7|chr6 (13197481-13197732)
               

               
               9-283, gnl|oryCun1|scaffold_95266 (4285-4475)
               

               
               9-283, gnl|panTro1|chr6 (13042147-13042330)
               

               
               9-283, gnl|rheMac2|chr3 (113728019-113727836)
               

               
               9-283, gnl|rn3|chr4 (38854516-38854758)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-283, gnl|bosTau2|chr4 (5834207-5833938)
               

               
               9-283, gnl|canFam2|chr14 (30284012-30284199)
               

               
               9-283, gnl|hg17|chr7 (12299392-12299575)
               

               
               9-283, gnl|Hg17|chr7 (12299411-12299678)
               

               
               9-283, gnl|loxAfr1|scaffold_5397 (33551-33363)
               

               
               9-283, gnl|mm7|chr6 (13197481-13197732)
               

               
               9-283, gnl|oryCun1|scaffold_95266 (4285-4475)
               

               
               9-283, gnl|panTro1|chr6 (13042147-13042330)
               

               
               9-283, gnl|rheMac2|chr3 (113728019-113727836)
               

               
               9-283, gnl|rn3|chr4 (38854516-38854758)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.612276)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.612276)

	9-283, gnl\|bosTau2\|chr4 (5834207-5833938)
	9-283, gnl\|canFam2\|chr14 (30284012-30284199)
	9-283, gnl\|hg17\|chr7 (12299392-12299575)
	9-283, gnl\|Hg17\|chr7 (12299411-12299678)
	9-283, gnl\|loxAfr1\|scaffold_5397 (33551-33363)
	9-283, gnl\|mm7\|chr6 (13197481-13197732)
	9-283, gnl\|oryCun1\|scaffold_95266 (4285-4475)
	9-283, gnl\|panTro1\|chr6 (13042147-13042330)
	9-283, gnl\|rheMac2\|chr3 (113728019-113727836)
	9-283, gnl\|rn3\|chr4 (38854516-38854758)