Ss1.1-rplac_0247.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCGGTGAAGAGCAACGTGCACGACAACTGCCAGGTCACCAACCCCGTCACTGGACACC TGTTTGACCTGAGCTCTTTAAGCGGCAGGGCCGGGTACACCGCCGCTTACAGCGAGAAGG GGCTGGTTTACATCAGCGTGTGTGGGGACAACGAGAACTGCGCCCCTGGCGTGGGGGCCT GCTTCGGGCAGACCAGGATCAGCGTGGGCAAGGCAAACAAGAGGCTGACCTACGAGGACC AGGTCCTGCGGCTGGTGTACAAGAACGGCTCCCCCTGTCCTTCCAAGACCGGCCTGACCT ACACGAGTGTCATCAGCTTCGTGTGCAGGCCCGAGGCCGGGCCCACCGACAAGCCCGTGC TCATCTCGCTCGACAAGCAGACGTGCACGCTCTTCTTCTCCTGGCACACGCCGCTGGCCT GCGAGCAGGAGGTGGAGTGCACTGTGCGGAACGGCAGCTCCATCATCGACCTGTCCCCCC TCATCCACCGCACCGGGGGCTACGAGGCCTTCGACGAGAGCGAGGACGCCGCCTCCGACA CCAACCCTGACTTTTACATCAACATCTGCCAGCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCGGTGAAGAGCAACGTGCACGACAACTGCCAGGTCACCAACCCCGTCACTGGACACC TGTTTGACCTGAGCTCTTTAAGCGGCAGGGCCGGGTACACCGCCGCTTACAGCGAGAAGG GGCTGGTTTACATCAGCGTGTGTGGGGACAACGAGAACTGCGCCCCTGGCGTGGGGGCCT GCTTCGGGCAGACCAGGATCAGCGTGGGCAAGGCAAACAAGAGGCTGACCTACGAGGACC AGGTCCTGCGGCTGGTGTACAAGAACGGCTCCCCCTGTCCTTCCAAGACCGGCCTGACCT ACACGAGTGTCATCAGCTTCGTGTGCAGGCCCGAGGCCGGGCCCACCGACAAGCCCGTGC TCATCTCGCTCGACAAGCAGACGTGCACGCTCTTCTTCTCCTGGCACACGCCGCTGGCCT GCGAGCAGGAGGTGGAGTGCACTGTGCGGAACGGCAGCTCCATCATCGACCTGTCCCCCC TCATCCACCGCACCGGGGGCTACGAGGCCTTCGACGAGAGCGAGGACGCCGCCTCCGACA CCAACCCTGACTTTTACATCAACATCTGCCAGCCGC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 293-434, - strand, RNAz p=0.623425 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 293-434, - strand, RNAz p=0.623425 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 174-434, gnl|bosTau2|chr9 (59098912-59099172) | |
| 174-434, gnl|canFam2|chr1 (52283023-52283316) | |
| 174-434, gnl|danRer3|chr20 (49983273-49983545) | |
| 174-434, gnl|echTel1|scaffold_286606 (108950-109238) | |
| 174-434, gnl|fr1|chrUn (154813687-154814046) | |
| 174-434, gnl|galGal2|chr3 (41614013-41613735) | |
| 174-434, gnl|hg17|chr6 (160464646-160464936) | |
| 174-434, gnl|Hg17|chr6 (160464655-160464915) | |
| 174-434, gnl|mm7|chr17 (11415400-11415119) | |
| 174-434, gnl|Mm7|chr17 (11415390-11415130) | |
| 174-434, gnl|monDom2|scaffold_0 (43213213-43212917) | |
| 174-434, gnl|oryCun1|scaffold_210371 (27751-27457) | |
| 174-434, gnl|panTro1|chr5 (164328585-164328875) | |
| 174-434, gnl|rheMac2|chr4 (157069181-157069471) | |
| 174-434, gnl|rn3|chr1 (42329590-42329883) | |
| 174-434, gnl|tetNig1|chr14 (9149474-9149116) | |
| 174-434, gnl|xenTro1|scaffold_41 (2902213-2901933) | |
| 435-576, gnl|bosTau2|chr9 (59099454-59099595) | |
| 435-576, gnl|canFam2|chr1 (52283582-52283746) | |
| 435-576, gnl|danRer3|chr20 (49985257-49985412) | |
| 435-576, gnl|dasNov1|scaffold_8042 (52825-52993) | |
| 435-576, gnl|echTel1|scaffold_286606 (109760-109924) | |
| 435-576, gnl|fr1|chrUn (154814111-154814246) | |
| 435-576, gnl|galGal2|chr3 (41612118-41611970) | |
| 435-576, gnl|hg17|chr6 (160465169-160465336) | |
| 435-576, gnl|Hg17|chr6 (160465203-160465344) | |
| 435-576, gnl|mm7|chr17 (11414624-11414456) | |
| 435-576, gnl|Mm7|chr17 (11414587-11414446) | |
| 435-576, gnl|monDom2|scaffold_0 (43212654-43212492) | |
| 435-576, gnl|oryCun1|scaffold_210371 (27335-27168) | |
| 435-576, gnl|panTro1|chr5 (164329109-164329276) | |
| 435-576, gnl|rheMac2|chr4 (157069701-157069868) | |
| 435-576, gnl|rn3|chr1 (42330229-42330396) | |
| 435-576, gnl|tetNig1|chr14 (9149050-9148896) | |
| 435-576, gnl|xenTro1|scaffold_41 (2901442-2901282) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 174-434, gnl|bosTau2|chr9 (59098912-59099172) | |
| 174-434, gnl|canFam2|chr1 (52283023-52283316) | |
| 174-434, gnl|danRer3|chr20 (49983273-49983545) | |
| 174-434, gnl|echTel1|scaffold_286606 (108950-109238) | |
| 174-434, gnl|fr1|chrUn (154813687-154814046) | |
| 174-434, gnl|galGal2|chr3 (41614013-41613735) | |
| 174-434, gnl|hg17|chr6 (160464646-160464936) | |
| 174-434, gnl|Hg17|chr6 (160464655-160464915) | |
| 174-434, gnl|mm7|chr17 (11415400-11415119) | |
| 174-434, gnl|Mm7|chr17 (11415390-11415130) | |
| 174-434, gnl|monDom2|scaffold_0 (43213213-43212917) | |
| 174-434, gnl|oryCun1|scaffold_210371 (27751-27457) | |
| 174-434, gnl|panTro1|chr5 (164328585-164328875) | |
| 174-434, gnl|rheMac2|chr4 (157069181-157069471) | |
| 174-434, gnl|rn3|chr1 (42329590-42329883) | |
| 174-434, gnl|tetNig1|chr14 (9149474-9149116) | |
| 174-434, gnl|xenTro1|scaffold_41 (2902213-2901933) | |
| 435-576, gnl|bosTau2|chr9 (59099454-59099595) | |
| 435-576, gnl|canFam2|chr1 (52283582-52283746) | |
| 435-576, gnl|danRer3|chr20 (49985257-49985412) | |
| 435-576, gnl|dasNov1|scaffold_8042 (52825-52993) | |
| 435-576, gnl|echTel1|scaffold_286606 (109760-109924) | |
| 435-576, gnl|fr1|chrUn (154814111-154814246) | |
| 435-576, gnl|galGal2|chr3 (41612118-41611970) | |
| 435-576, gnl|hg17|chr6 (160465169-160465336) | |
| 435-576, gnl|Hg17|chr6 (160465203-160465344) | |
| 435-576, gnl|mm7|chr17 (11414624-11414456) | |
| 435-576, gnl|Mm7|chr17 (11414587-11414446) | |
| 435-576, gnl|monDom2|scaffold_0 (43212654-43212492) | |
| 435-576, gnl|oryCun1|scaffold_210371 (27335-27168) | |
| 435-576, gnl|panTro1|chr5 (164329109-164329276) | |
| 435-576, gnl|rheMac2|chr4 (157069701-157069868) | |
| 435-576, gnl|rn3|chr1 (42330229-42330396) | |
| 435-576, gnl|tetNig1|chr14 (9149050-9148896) | |
| 435-576, gnl|xenTro1|scaffold_41 (2901442-2901282) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |