Non-Coding RNA Search

Ss1.1-rplac_0265.5

Sequence:


               
               AGGTCTGAGCAGCAGAAAGCGACTGAGAACGAGAAGATGGTCCAGGAGCAGGTCCGGGCC
CTCGAGGAGTCCTTGAAGGTCAGCCAGGGCCGCCTGGAGGAGGAGACGCGCAGGGCCGCG
GGCGCCCTGGAGGAGCAGCAGCGCTGTATCTGCAGGCTGGAGGCCGAGACCCGGAGCCTG
GCCGAGCAGCGCAAGCAGGAACAGAAGGAGCTGGAAGAAGAGAAGGCTGGGCGCAAGGGG
CTGGAGGCCCGATTGCAACAGCTCGGGGAGGCCCATCAGGCCAAGACAGAAGCCCTGCGG
CAGGAGCTGGCCGAGGCCCTGGCCTCCCGGCGCGAGGCTGAGAGCGAGTGTGAGCAGCTC
GCAAGGAGGTGGCTACCTGGCGGGAGCGCTACGAGGACAGCCAGCAGGAGGAGGCGCAGT
ACGGCGCCATGGTCCAGGAACAGCTGCTGACTCTGAAGGAGGAGTGCGAGAAGGCCCGCC
AGGAGCTGCAGGAGGCCAAGGAGAAGGTGGCAGGGATCGAGGCCCACAGCGAGCTCCAGA
TAAGCCGCCAGCAGAGCGAGCTCGCTCAGCTCCACGCCAGCCTGGCCAGGGCTCTGCAGC
AGGTCCAGGAGAAGGAGGCCCGGGCCCAGAAGCTCGCAGACGACCTCTCCGCCCTGCAGG
AGAAGATGGCGGCCACCAGCAAGGAGGTGGCCCGTCTGGAGGCCTTGGTGCGCAAGGCAG
GCGAGCAGCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTCTGAGCAGCAGAAAGCGACTGAGAACGAGAAGATGGTCCAGGAGCAGGTCCGGGCC
CTCGAGGAGTCCTTGAAGGTCAGCCAGGGCCGCCTGGAGGAGGAGACGCGCAGGGCCGCG
GGCGCCCTGGAGGAGCAGCAGCGCTGTATCTGCAGGCTGGAGGCCGAGACCCGGAGCCTG
GCCGAGCAGCGCAAGCAGGAACAGAAGGAGCTGGAAGAAGAGAAGGCTGGGCGCAAGGGG
CTGGAGGCCCGATTGCAACAGCTCGGGGAGGCCCATCAGGCCAAGACAGAAGCCCTGCGG
CAGGAGCTGGCCGAGGCCCTGGCCTCCCGGCGCGAGGCTGAGAGCGAGTGTGAGCAGCTC
GCAAGGAGGTGGCTACCTGGCGGGAGCGCTACGAGGACAGCCAGCAGGAGGAGGCGCAGT
ACGGCGCCATGGTCCAGGAACAGCTGCTGACTCTGAAGGAGGAGTGCGAGAAGGCCCGCC
AGGAGCTGCAGGAGGCCAAGGAGAAGGTGGCAGGGATCGAGGCCCACAGCGAGCTCCAGA
TAAGCCGCCAGCAGAGCGAGCTCGCTCAGCTCCACGCCAGCCTGGCCAGGGCTCTGCAGC
AGGTCCAGGAGAAGGAGGCCCGGGCCCAGAAGCTCGCAGACGACCTCTCCGCCCTGCAGG
AGAAGATGGCGGCCACCAGCAAGGAGGTGGCCCGTCTGGAGGCCTTGGTGCGCAAGGCAG
GCGAGCAGCAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               599-729, - strand, RNAz p=0.667084

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               599-729, - strand, RNAz p=0.667084

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK126629, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK126629, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               41-729, gnl|bosTau2|chr15 (30020545-30021234)
               

               
               41-729, gnl|Hg17|chr11 (71404098-71403409)
               

               
               41-729, gnl|Mm7|chr7 (98045243-98045911)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-729, gnl|bosTau2|chr15 (30020545-30021234)
               

               
               41-729, gnl|Hg17|chr11 (71404098-71403409)
               

               
               41-729, gnl|Mm7|chr7 (98045243-98045911)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.401016)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)

	41-729, gnl\|bosTau2\|chr15 (30020545-30021234)
	41-729, gnl\|Hg17\|chr11 (71404098-71403409)
	41-729, gnl\|Mm7\|chr7 (98045243-98045911)