Non-Coding RNA Search

Ss1.1-rplac_0266.5

Sequence:


               
               CAATTTTCCACAAGATTCAAGAATCTTGTATAAAATTCAGCCAACGTACACATAGCTTTA
ATGAGGAGCCTGTCGTGTTTCCCCATAAATTTATTGCCTGAGAACTAAGTTCAGCCTTTT
GCTAATGCCAAAATGCTCTGGCTTTTTATTTTCTTTACAGCATAGATTTTTTAAAATGCA
GATTTTTTTTCCACACTCAACTTTCCCTTAGCACGGACATGATTTTCAGCCATTTTGGAC
ACACATACATTTTTAAGAAAAAAAATTTCTTTTTTTCTGTGTGACAGAGTTCTGGTTATG
CCATTTTCAAGTTGACTAGTCAGGAGTTTAGATTTCCCCCACTCTGTTTTGAAAATAAAT
GATAGTCCCCCGCTTCGTTCCTATTTTGCATTCCCATCACCACACAACACTAGTGTCTTA
GAAACTACTGTGTATATATGCAAAGTCATTGTAGCCGAACCTATTAGATTTGCTGTGCAT
TTAGTTGAGAGATCTGGCAGGTTGACTATGTTTATGTGTGTTTCTCCATAGTGCTTTGCC
TGTTGGTAAGAATTTTAAATAACTACTCCTCAAAGACCTTTCCTGATTCTGCATTTTGTG
TGTTAAATATCACTTGCAGTTTTTACATGCTCAAGCTATTGCTTTCAATGTTTTGCTTTA
CTAGTTTCTTCATTAGATTAACTGGCATGTATTATTTAAGTGATCTGTGACACTTTGTGC
AATTATGAATGTCAAAGATTAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATTTTCCACAAGATTCAAGAATCTTGTATAAAATTCAGCCAACGTACACATAGCTTTA
ATGAGGAGCCTGTCGTGTTTCCCCATAAATTTATTGCCTGAGAACTAAGTTCAGCCTTTT
GCTAATGCCAAAATGCTCTGGCTTTTTATTTTCTTTACAGCATAGATTTTTTAAAATGCA
GATTTTTTTTCCACACTCAACTTTCCCTTAGCACGGACATGATTTTCAGCCATTTTGGAC
ACACATACATTTTTAAGAAAAAAAATTTCTTTTTTTCTGTGTGACAGAGTTCTGGTTATG
CCATTTTCAAGTTGACTAGTCAGGAGTTTAGATTTCCCCCACTCTGTTTTGAAAATAAAT
GATAGTCCCCCGCTTCGTTCCTATTTTGCATTCCCATCACCACACAACACTAGTGTCTTA
GAAACTACTGTGTATATATGCAAAGTCATTGTAGCCGAACCTATTAGATTTGCTGTGCAT
TTAGTTGAGAGATCTGGCAGGTTGACTATGTTTATGTGTGTTTCTCCATAGTGCTTTGCC
TGTTGGTAAGAATTTTAAATAACTACTCCTCAAAGACCTTTCCTGATTCTGCATTTTGTG
TGTTAAATATCACTTGCAGTTTTTACATGCTCAAGCTATTGCTTTCAATGTTTTGCTTTA
CTAGTTTCTTCATTAGATTAACTGGCATGTATTATTTAAGTGATCTGTGACACTTTGTGC
AATTATGAATGTCAAAGATTAAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr4 (50700582-50701322)
               

               
               1-744, gnl|Hg17|chr7 (129631082-129630340)
               

               
               1-744, gnl|Mm7|chr6 (30586306-30585617)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr4 (50700582-50701322)
               

               
               1-744, gnl|Hg17|chr7 (129631082-129630340)
               

               
               1-744, gnl|Mm7|chr6 (30586306-30585617)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sin (0.174948)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	1-744, gnl\|bosTau2\|chr4 (50700582-50701322)
	1-744, gnl\|Hg17\|chr7 (129631082-129630340)
	1-744, gnl\|Mm7\|chr6 (30586306-30585617)