Non-Coding RNA Search

Ss1.1-rplac_0333.5.5

Sequence:


               
               CTTGGTGTCGGGGCCATTTCAACCATGTGCCTTACGGTAACTTGCTCCAAACCTCCCGTG
CCCCTTGTCCAGCCAGGTTGAGCCTGGGGACAGGTTGGGGACCAACCACAGGACAGTTTT
CACATGCCATAAATGTATCCATTGCCTTTGATGATGCTCTCAGCCACACTCTAGTCAATG
GAGGTCACTGATCCCTCACTCAGGTTTGGGGGGAGATCTCCTTCTGCTTCTTCCTAAACA
GTCTTAGGGAGTTGGCTTTTTTTGCCAGGGCCAAAGGAGAAAGTCCTGCCGTATTTAAAA
ACAAAGTGTCCGGGCTGTCAGTGGGGTGTTTACAATCGCTTCTGGCGGACACTGGCCTTT
TCTCTAATGCCTTCTGGAAGGCAGAAAATGTGTAGTGGGGACTATAAATCACTAGGCTGT
TGCCTTGTTTTGACTTGAGACACCCAAGAGGAACAGTCATGTTTCTCATAAAAATCGGTG
GGATCGTTCTGAATTCCATCAGCCTTTGTATGTGAGTGCAAAACACTTTCACAGTTTTCT
CACATCGACAAACAGCCTTCTGCTACAGCTGTAACCCCTCTGCCCGGACCATGGATGAGA
AAGGAAGGAGTCAGAAACCTGATAAAAAACAATGAGCAACTCAAGTTGTCTCTCTCTAAA
AATTACCTACTACTGATGACAGCTGAGACGGAACCAAATGTTTGTTTTCTGATTTTAAAA
AAAGCAAAACAAAACAAAAAACACAACTCTGACAAATTCGTCTTTGTGAGCTGAGTAAAA
GGGGAAATTTCTAAACCCAGAGCACCACTTGGCCCGTGTTTGCAGCCTCTTTCCTGGCCG
TGTTTTAGGGAGGAGGATTTGAGCGGCAGGCCTGCCTCCTGCACTCGTTCTCACAAAGCT
GCCGTGATTGCAGCTTGCCAGCCTTTGGTGCCACACTGCACGCCTTCTGTGGGCGGCTGG
CCTTTGAGACAGGCCTGCGTCTCTGGGACTCGGCCTGGCTTTACACGTGCGGGAAAAGCC
TCAGGCTGCTCAGAGAGCTGCAGTTCTACCTGCTGTGTTTGCTGCCCCTCCTTCCTGTAC
CATGTCAGCCGTCATGGAACCCTATGTGATTTGGGTGATTTCTGTAAAGGTGGAAAGTCA
TTTTTCTATAATTTGTAAAGTTGTGAAAAAGCCACTATCATGGTTTTTACATTGAATATT
GGAACATTTCAGAAATAATAAAGGTATTTTCCTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGTGTCGGGGCCATTTCAACCATGTGCCTTACGGTAACTTGCTCCAAACCTCCCGTG
CCCCTTGTCCAGCCAGGTTGAGCCTGGGGACAGGTTGGGGACCAACCACAGGACAGTTTT
CACATGCCATAAATGTATCCATTGCCTTTGATGATGCTCTCAGCCACACTCTAGTCAATG
GAGGTCACTGATCCCTCACTCAGGTTTGGGGGGAGATCTCCTTCTGCTTCTTCCTAAACA
GTCTTAGGGAGTTGGCTTTTTTTGCCAGGGCCAAAGGAGAAAGTCCTGCCGTATTTAAAA
ACAAAGTGTCCGGGCTGTCAGTGGGGTGTTTACAATCGCTTCTGGCGGACACTGGCCTTT
TCTCTAATGCCTTCTGGAAGGCAGAAAATGTGTAGTGGGGACTATAAATCACTAGGCTGT
TGCCTTGTTTTGACTTGAGACACCCAAGAGGAACAGTCATGTTTCTCATAAAAATCGGTG
GGATCGTTCTGAATTCCATCAGCCTTTGTATGTGAGTGCAAAACACTTTCACAGTTTTCT
CACATCGACAAACAGCCTTCTGCTACAGCTGTAACCCCTCTGCCCGGACCATGGATGAGA
AAGGAAGGAGTCAGAAACCTGATAAAAAACAATGAGCAACTCAAGTTGTCTCTCTCTAAA
AATTACCTACTACTGATGACAGCTGAGACGGAACCAAATGTTTGTTTTCTGATTTTAAAA
AAAGCAAAACAAAACAAAAAACACAACTCTGACAAATTCGTCTTTGTGAGCTGAGTAAAA
GGGGAAATTTCTAAACCCAGAGCACCACTTGGCCCGTGTTTGCAGCCTCTTTCCTGGCCG
TGTTTTAGGGAGGAGGATTTGAGCGGCAGGCCTGCCTCCTGCACTCGTTCTCACAAAGCT
GCCGTGATTGCAGCTTGCCAGCCTTTGGTGCCACACTGCACGCCTTCTGTGGGCGGCTGG
CCTTTGAGACAGGCCTGCGTCTCTGGGACTCGGCCTGGCTTTACACGTGCGGGAAAAGCC
TCAGGCTGCTCAGAGAGCTGCAGTTCTACCTGCTGTGTTTGCTGCCCCTCCTTCCTGTAC
CATGTCAGCCGTCATGGAACCCTATGTGATTTGGGTGATTTCTGTAAAGGTGGAAAGTCA
TTTTTCTATAATTTGTAAAGTTGTGAAAAAGCCACTATCATGGTTTTTACATTGAATATT
GGAACATTTCAGAAATAATAAAGGTATTTTCCTAAT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               162-277, - strand, RNAz p=0.927399
               

               
               358-552, + strand, RNAz p=0.596434
               

               
               1131-1236, - strand, RNAz p=0.970669

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-277, - strand, RNAz p=0.927399
               

               
               358-552, + strand, RNAz p=0.596434
               

               
               1131-1236, - strand, RNAz p=0.970669

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_017851, +
               

               
               5' of NM_017851, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017851, +
               

               
               5' of NM_017851, -

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               3-716, gnl|bosTau2|chr10 (8637181-8636478)
               

               
               3-716, gnl|Hg17|chr15 (63338785-63338053)
               

               
               3-716, gnl|Mm7|chr9 (65267642-65268360)
               


               
               979-1236, gnl|bosTau2|chr10 (8636180-8635919)
               

               
               979-1236, gnl|canFam2|chr30 (32621354-32621647)
               

               
               979-1236, gnl|dasNov1|scaffold_112938 (5406-5689)
               

               
               979-1236, gnl|echTel1|scaffold_223567 (9656-9391)
               

               
               979-1236, gnl|hg17|chr15 (63337435-63337734)
               

               
               979-1236, gnl|Hg17|chr15 (63337758-63337492)
               

               
               979-1236, gnl|loxAfr1|scaffold_22521 (41370-41644)
               

               
               979-1236, gnl|mm7|chr9 (65268915-65268638)
               

               
               979-1236, gnl|Mm7|chr9 (65268608-65268859)
               

               
               979-1236, gnl|oryCun1|scaffold_204806 (23545-23278)
               

               
               979-1236, gnl|panTro1|chr16 (63824093-63824388)
               

               
               979-1236, gnl|rheMac2|chr7 (43738322-43738621)
               

               
               979-1236, gnl|rn3|chr8 (69496618-69496340)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-716, gnl|bosTau2|chr10 (8637181-8636478)
               

               
               3-716, gnl|Hg17|chr15 (63338785-63338053)
               

               
               3-716, gnl|Mm7|chr9 (65267642-65268360)
               


               
               979-1236, gnl|bosTau2|chr10 (8636180-8635919)
               

               
               979-1236, gnl|canFam2|chr30 (32621354-32621647)
               

               
               979-1236, gnl|dasNov1|scaffold_112938 (5406-5689)
               

               
               979-1236, gnl|echTel1|scaffold_223567 (9656-9391)
               

               
               979-1236, gnl|hg17|chr15 (63337435-63337734)
               

               
               979-1236, gnl|Hg17|chr15 (63337758-63337492)
               

               
               979-1236, gnl|loxAfr1|scaffold_22521 (41370-41644)
               

               
               979-1236, gnl|mm7|chr9 (65268915-65268638)
               

               
               979-1236, gnl|Mm7|chr9 (65268608-65268859)
               

               
               979-1236, gnl|oryCun1|scaffold_204806 (23545-23278)
               

               
               979-1236, gnl|panTro1|chr16 (63824093-63824388)
               

               
               979-1236, gnl|rheMac2|chr7 (43738322-43738621)
               

               
               979-1236, gnl|rn3|chr8 (69496618-69496340)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               lun (0.150489)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	162-277, - strand, RNAz p=0.927399
	358-552, + strand, RNAz p=0.596434
	1131-1236, - strand, RNAz p=0.970669

	3-716, gnl\|bosTau2\|chr10 (8637181-8636478)
	3-716, gnl\|Hg17\|chr15 (63338785-63338053)
	3-716, gnl\|Mm7\|chr9 (65267642-65268360)

	979-1236, gnl\|bosTau2\|chr10 (8636180-8635919)
	979-1236, gnl\|canFam2\|chr30 (32621354-32621647)
	979-1236, gnl\|dasNov1\|scaffold_112938 (5406-5689)
	979-1236, gnl\|echTel1\|scaffold_223567 (9656-9391)
	979-1236, gnl\|hg17\|chr15 (63337435-63337734)
	979-1236, gnl\|Hg17\|chr15 (63337758-63337492)
	979-1236, gnl\|loxAfr1\|scaffold_22521 (41370-41644)
	979-1236, gnl\|mm7\|chr9 (65268915-65268638)
	979-1236, gnl\|Mm7\|chr9 (65268608-65268859)
	979-1236, gnl\|oryCun1\|scaffold_204806 (23545-23278)
	979-1236, gnl\|panTro1\|chr16 (63824093-63824388)
	979-1236, gnl\|rheMac2\|chr7 (43738322-43738621)
	979-1236, gnl\|rn3\|chr8 (69496618-69496340)

	lun (0.150489)
	nca (0.136874)
	pla (0.133672)
	nbm (0.0993246)
	jej (0.0989218)