Ss1.1-rplac_0359.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGGTGCTAGCATTATTCAGTGTCACATTCTTAATGATAAGAGGCATATATTAACCAAA GATACCAATAATAATGTGGCGTATTGGGATGTATTGAAGGCATGTAAAGTTGAAGATCTG GGCAAAGTGGATTTTGAAGATGAAATTAAGAAAAGATTTAAGATGGTATATGTACCAAAT TGGTTCTCAGTAGACTTGAAAACAGGGATGCTGACAATTACATTGGATGAGAGTGACTGT TTTGCTGCTTGGGTTTCTGCAAAAGACGCTGGCTTCAGCAGCCCTGATGGGTCAGATCCA AAGCTGAATTTAGGAGGGCTTTTACTCCAGGCACTTCTAGAATATTGGCCTAGAACACAT GTGAATCCAATGGATGAAGAAGAAAATGAAGTAAACCATGTAAATGGGGAACAGGAGAAC CGAGTACAGAAGGGGAATGGCTATTTCCAAGTTCCTCCACACACCCCTGTGATATTTGGT GAAGCGGGAGGTCGCACCCTGTTCAGGCTGCTCTGCCGAGATTCTGGTGGTGAGACTGAG TCCATGCTTCTTAATGAGACGGTGCCACAATGGGTAATTGACATCACTGTGGATAAAAAT ATGCCCAAATTCAACAAAATTCCTTTCTACCTCCAACCTCATGCATCTTCAGGAGCAAAA ACCTTAAAAAAAGATAGACTCTCTGCTAGTGATATGCTTCAAGTTCGGAAAGTAATGGAA CATGTCTATGAGAAGATCATCAACTTGGATAACGAGTCTCAAACCACTAGCTCTTCTAAT AATGAAAAGCCAGGAGAACAGGAAAAAGAAGAGGATATCGCTGTGTTGGCAGAGGAGAAA ATTGAACTTTTGTGCCAGGACCAGGTGTTGGATCCAAATATGGACCTTCGAACAGTGAAA CACTTCATATGGAAGAGTGGTGGTGATCTCACCCTCCATTATCGTCAGAAGTCCACGTGA AGAGGGGGCGAATGCTTCTGGGTATTCATTTACTGACCTTCCTCTAATGGCCCCAAGAGT AGTCCTAGGAAGCCTACTGAGCCCCAACGGGAACACGACTTCTAACGGCCGATTTGGTAT GGACTGAGATTCTCTTTCAATCGAAGTGACTAATCGAGATGTAATATAGAAACCAGTCTC CATGTGTAGGTTAAGCTATCCCCAGGAAAGCTGCGTGCAGAGCAGAAGAGCCCCAAGCTA TGTCTTGTGAGATGTACAGAGGACTGACGACAGGCCAGTGCAGACTTTGCTTCCTCCTTT TGTTTCAAAGGACCTTATCTTGATCTGTTAGCACTTGTTAGAGACACATTGGTAGGGCCA CATCTGTCAACTGTGTTTCAACTCCAAATCCACACACTCTGTAGCTTTTCTAAGAGTACA TTCCATTCATGCAGTACCTATGAAGGCTTTTGCCAAGTTTGTCATTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGGTGCTAGCATTATTCAGTGTCACATTCTTAATGATAAGAGGCATATATTAACCAAA GATACCAATAATAATGTGGCGTATTGGGATGTATTGAAGGCATGTAAAGTTGAAGATCTG GGCAAAGTGGATTTTGAAGATGAAATTAAGAAAAGATTTAAGATGGTATATGTACCAAAT TGGTTCTCAGTAGACTTGAAAACAGGGATGCTGACAATTACATTGGATGAGAGTGACTGT TTTGCTGCTTGGGTTTCTGCAAAAGACGCTGGCTTCAGCAGCCCTGATGGGTCAGATCCA AAGCTGAATTTAGGAGGGCTTTTACTCCAGGCACTTCTAGAATATTGGCCTAGAACACAT GTGAATCCAATGGATGAAGAAGAAAATGAAGTAAACCATGTAAATGGGGAACAGGAGAAC CGAGTACAGAAGGGGAATGGCTATTTCCAAGTTCCTCCACACACCCCTGTGATATTTGGT GAAGCGGGAGGTCGCACCCTGTTCAGGCTGCTCTGCCGAGATTCTGGTGGTGAGACTGAG TCCATGCTTCTTAATGAGACGGTGCCACAATGGGTAATTGACATCACTGTGGATAAAAAT ATGCCCAAATTCAACAAAATTCCTTTCTACCTCCAACCTCATGCATCTTCAGGAGCAAAA ACCTTAAAAAAAGATAGACTCTCTGCTAGTGATATGCTTCAAGTTCGGAAAGTAATGGAA CATGTCTATGAGAAGATCATCAACTTGGATAACGAGTCTCAAACCACTAGCTCTTCTAAT AATGAAAAGCCAGGAGAACAGGAAAAAGAAGAGGATATCGCTGTGTTGGCAGAGGAGAAA ATTGAACTTTTGTGCCAGGACCAGGTGTTGGATCCAAATATGGACCTTCGAACAGTGAAA CACTTCATATGGAAGAGTGGTGGTGATCTCACCCTCCATTATCGTCAGAAGTCCACGTGA AGAGGGGGCGAATGCTTCTGGGTATTCATTTACTGACCTTCCTCTAATGGCCCCAAGAGT AGTCCTAGGAAGCCTACTGAGCCCCAACGGGAACACGACTTCTAACGGCCGATTTGGTAT GGACTGAGATTCTCTTTCAATCGAAGTGACTAATCGAGATGTAATATAGAAACCAGTCTC CATGTGTAGGTTAAGCTATCCCCAGGAAAGCTGCGTGCAGAGCAGAAGAGCCCCAAGCTA TGTCTTGTGAGATGTACAGAGGACTGACGACAGGCCAGTGCAGACTTTGCTTCCTCCTTT TGTTTCAAAGGACCTTATCTTGATCTGTTAGCACTTGTTAGAGACACATTGGTAGGGCCA CATCTGTCAACTGTGTTTCAACTCCAAATCCACACACTCTGTAGCTTTTCTAAGAGTACA TTCCATTCATGCAGTACCTATGAAGGCTTTTGCCAAGTTTGTCATTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 862-980, - strand, RNAz p=0.70991 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 862-980, - strand, RNAz p=0.70991 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 98-207, gnl|bosTau2|chr22 (11307482-11307373) | |
| 98-207, gnl|canFam2|chr23 (11762559-11762681) | |
| 98-207, gnl|danRer3|chr24 (32929178-32929059) | |
| 98-207, gnl|dasNov1|scaffold_11675 (38616-38738) | |
| 98-207, gnl|echTel1|scaffold_182957 (7236-7358) | |
| 98-207, gnl|fr1|chrUn (68200001-68200120) | |
| 98-207, gnl|galGal2|chr2 (4757594-4757472) | |
| 98-207, gnl|hg17|chr3 (39100644-39100766) | |
| 98-207, gnl|Hg17|chr3 (39100648-39100757) | |
| 98-207, gnl|mm7|chr9 (119612615-119612737) | |
| 98-207, gnl|Mm7|chr9 (119612619-119612728) | |
| 98-207, gnl|monDom2|scaffold_128 (2697350-2697493) | |
| 98-207, gnl|oryCun1|scaffold_195389 (55296-55174) | |
| 98-207, gnl|panTro1|chr2 (40211451-40211573) | |
| 98-207, gnl|rheMac2|chr2 (97436216-97436094) | |
| 98-207, gnl|rn3|chr8 (124893106-124893228) | |
| 98-207, gnl|tetNig1|chr15 (2313179-2313065) | |
| 98-207, gnl|xenTro1|scaffold_647 (603530-603408) | |
| 500-615, gnl|bosTau2|chr22 (11301531-11301416) | |
| 500-615, gnl|Hg17|chr3 (39105719-39105834) | |
| 500-615, gnl|Mm7|chr9 (119616445-119616560) | |
| 862-1440, gnl|bosTau2|chr22 (11296645-11296069) | |
| 862-1440, gnl|Hg17|chr3 (39111140-39111715) | |
| 862-1440, gnl|Mm7|chr9 (119620601-119621143) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-207, gnl|bosTau2|chr22 (11307482-11307373) | |
| 98-207, gnl|canFam2|chr23 (11762559-11762681) | |
| 98-207, gnl|danRer3|chr24 (32929178-32929059) | |
| 98-207, gnl|dasNov1|scaffold_11675 (38616-38738) | |
| 98-207, gnl|echTel1|scaffold_182957 (7236-7358) | |
| 98-207, gnl|fr1|chrUn (68200001-68200120) | |
| 98-207, gnl|galGal2|chr2 (4757594-4757472) | |
| 98-207, gnl|hg17|chr3 (39100644-39100766) | |
| 98-207, gnl|Hg17|chr3 (39100648-39100757) | |
| 98-207, gnl|mm7|chr9 (119612615-119612737) | |
| 98-207, gnl|Mm7|chr9 (119612619-119612728) | |
| 98-207, gnl|monDom2|scaffold_128 (2697350-2697493) | |
| 98-207, gnl|oryCun1|scaffold_195389 (55296-55174) | |
| 98-207, gnl|panTro1|chr2 (40211451-40211573) | |
| 98-207, gnl|rheMac2|chr2 (97436216-97436094) | |
| 98-207, gnl|rn3|chr8 (124893106-124893228) | |
| 98-207, gnl|tetNig1|chr15 (2313179-2313065) | |
| 98-207, gnl|xenTro1|scaffold_647 (603530-603408) | |
| 500-615, gnl|bosTau2|chr22 (11301531-11301416) | |
| 500-615, gnl|Hg17|chr3 (39105719-39105834) | |
| 500-615, gnl|Mm7|chr9 (119616445-119616560) | |
| 862-1440, gnl|bosTau2|chr22 (11296645-11296069) | |
| 862-1440, gnl|Hg17|chr3 (39111140-39111715) | |
| 862-1440, gnl|Mm7|chr9 (119620601-119621143) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| ova (0.258264) | |
| sug (0.254582) | |
| tes (0.207814) | |
| gul (0.177588) | |
| fhi (0.169578) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| thg (0.126791) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.258264) | |
| sug (0.254582) | |
| tes (0.207814) | |
| gul (0.177588) | |
| fhi (0.169578) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| thg (0.126791) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cty (0.10408) |