Non-Coding RNA Search

Ss1.1-rplac_0393.5

Sequence:


               
               GCAGCAGCGGTGGCGGCAGCAACAGCGCTGGGGAGCCTGGAGGCGCCGAGAGCAGCTCGT
CCCCGCGCGCCCCCGAGCGCGAAACCCCGGAGCCGGGCGACGGCGAGGGCCCTGGTGGAC
ACCCGAGGGCGAAGCAGCGCCCGGTCGCTAGGTCGAAAATCAAGTTCACGACAGGCACGT
GCGGCGACGCGGCGCTTCATAGCTGCGACCTGTGCGGCAAGGCCTTCCGCCTGCAGCGGA
TGCTCAACCGGCACCTCAAGTGCCACAACCAAGTGAAGAGGCACCTGTGTAGCTTCTGCG
GCAAGGGCTTCAACGACACCTTCGACCTCAAGCGGCACGTGCGCACGCACACAGGCATTC
GCCCCTACAAATGTGACATCTGCCACAAGGCCTTCACCCAGCGCTGCTCGTTGGAGTCCC
ACCTGAAGAAGATCCATGGCGTGCAGCAGCAGTACGCCTACAAGCAGCGCCGGGACAAGC
TGTACGTCTGCGAGGACTGCGGCTATACCGGCCCCACGCAGGAGGACCTGTACCTGCACG
TGAACGGTGCCCACCCAGGCAGCGCCTTCCTCAAAAAGACATCCAAAAAACTGGCAGCCC
TCTTGCAAAACAAGCTGACGTCCACGCTCCAGGAGAACGCCAAACTGAGTGAGGAGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCAGCGGTGGCGGCAGCAACAGCGCTGGGGAGCCTGGAGGCGCCGAGAGCAGCTCGT
CCCCGCGCGCCCCCGAGCGCGAAACCCCGGAGCCGGGCGACGGCGAGGGCCCTGGTGGAC
ACCCGAGGGCGAAGCAGCGCCCGGTCGCTAGGTCGAAAATCAAGTTCACGACAGGCACGT
GCGGCGACGCGGCGCTTCATAGCTGCGACCTGTGCGGCAAGGCCTTCCGCCTGCAGCGGA
TGCTCAACCGGCACCTCAAGTGCCACAACCAAGTGAAGAGGCACCTGTGTAGCTTCTGCG
GCAAGGGCTTCAACGACACCTTCGACCTCAAGCGGCACGTGCGCACGCACACAGGCATTC
GCCCCTACAAATGTGACATCTGCCACAAGGCCTTCACCCAGCGCTGCTCGTTGGAGTCCC
ACCTGAAGAAGATCCATGGCGTGCAGCAGCAGTACGCCTACAAGCAGCGCCGGGACAAGC
TGTACGTCTGCGAGGACTGCGGCTATACCGGCCCCACGCAGGAGGACCTGTACCTGCACG
TGAACGGTGCCCACCCAGGCAGCGCCTTCCTCAAAAAGACATCCAAAAAACTGGCAGCCC
TCTTGCAAAACAAGCTGACGTCCACGCTCCAGGAGAACGCCAAACTGAGTGAGGAGGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5102580|emb|CAB45151.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5102580|emb|CAB45151.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-164, gnl|bosTau2|chr13 (22006156-22005995)
               

               
               3-164, gnl|Hg17|chr20 (17985462-17985301)
               

               
               3-164, gnl|Mm7|chr2 (144071919-144071761)
               


               
               352-660, gnl|bosTau2|chr13 (21986239-21985931)
               

               
               352-660, gnl|Hg17|chr20 (17953599-17953291)
               

               
               352-660, gnl|Mm7|chr2 (144046779-144046471)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-164, gnl|bosTau2|chr13 (22006156-22005995)
               

               
               3-164, gnl|Hg17|chr20 (17985462-17985301)
               

               
               3-164, gnl|Mm7|chr2 (144071919-144071761)
               


               
               352-660, gnl|bosTau2|chr13 (21986239-21985931)
               

               
               352-660, gnl|Hg17|chr20 (17953599-17953291)
               

               
               352-660, gnl|Mm7|chr2 (144046779-144046471)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	3-164, gnl\|bosTau2\|chr13 (22006156-22005995)
	3-164, gnl\|Hg17\|chr20 (17985462-17985301)
	3-164, gnl\|Mm7\|chr2 (144071919-144071761)

	352-660, gnl\|bosTau2\|chr13 (21986239-21985931)
	352-660, gnl\|Hg17\|chr20 (17953599-17953291)
	352-660, gnl\|Mm7\|chr2 (144046779-144046471)