Non-Coding RNA Search

Ss1.1-rplac_0477.5

Sequence:


               
               ATATACACACATGTTCACTTCGGCGTCCCTGGATGGTGCAAATTTCAGTCATCAAGGGTG
TGTCTGGGAGGCTGGCTTAACCCAACACGAGCGCTCCCTGCCAAAAGTTGTACATGACAT
TTTTGTAAATCAAATCCTCATCGTTCATCTTTTAAAGAAAAACTACCACAAGTCCTTCGG
TAAAGTGGAAAATCCTTTTGTGGAATGGCCCCCCGCCCCCTCATTGAACTCGTGTGTCCG
TCCAGATGGTGGGAGGTGGTTTGCAAGGCAAGGCCTGCCTGTGACCCACATCTCGAGCCC
GTGGAACAAACCACGCACAAGCCCTGTACACCTGTCACTGTGCCCTCAGGGCACCCCAGC
CAGCCCTGACCAGGCTCTGCTTTGAGGTCGGAGGGAAGATGATGCGTTGGCTCTGCCCTG
TCCACAGCGGTGTGGGCTTCAGCCTGGTGGCTTGCCCTCGCCATGGCAGGGCCTGGGGGA
CAGCTGCATGCACACGGGGAATGAGCTCTGCCCCCCTCCCCTTCCTTTCAGGTTGTGCGG
TCCAGCTCGTAGGGGTGGGAGCAATGGGGTTAATGCTGGCAGCGCTCTGTCCCATTTCAC
CCCCCACTCGTACTTGGTTGACCATGAAGACTGCTTCCTTTCTGATACTTGGAAGCTCCT
GTGAGGAGCCCCATCTGATGGAGCACCTGTGCCAGGTGCTAGGGCCGTGTTTGCTTCCTG
GGGGCTCAAGGTGACATGGGGGGGAGAGTGGCCACCGTGTGCCTGGGAGGATGGGCTTTA
AGAGATGGGTCCCCCATTCTATCAGGAACTCAAGCTTCTGGCTCTCTCTTTTCTTAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATACACACATGTTCACTTCGGCGTCCCTGGATGGTGCAAATTTCAGTCATCAAGGGTG
TGTCTGGGAGGCTGGCTTAACCCAACACGAGCGCTCCCTGCCAAAAGTTGTACATGACAT
TTTTGTAAATCAAATCCTCATCGTTCATCTTTTAAAGAAAAACTACCACAAGTCCTTCGG
TAAAGTGGAAAATCCTTTTGTGGAATGGCCCCCCGCCCCCTCATTGAACTCGTGTGTCCG
TCCAGATGGTGGGAGGTGGTTTGCAAGGCAAGGCCTGCCTGTGACCCACATCTCGAGCCC
GTGGAACAAACCACGCACAAGCCCTGTACACCTGTCACTGTGCCCTCAGGGCACCCCAGC
CAGCCCTGACCAGGCTCTGCTTTGAGGTCGGAGGGAAGATGATGCGTTGGCTCTGCCCTG
TCCACAGCGGTGTGGGCTTCAGCCTGGTGGCTTGCCCTCGCCATGGCAGGGCCTGGGGGA
CAGCTGCATGCACACGGGGAATGAGCTCTGCCCCCCTCCCCTTCCTTTCAGGTTGTGCGG
TCCAGCTCGTAGGGGTGGGAGCAATGGGGTTAATGCTGGCAGCGCTCTGTCCCATTTCAC
CCCCCACTCGTACTTGGTTGACCATGAAGACTGCTTCCTTTCTGATACTTGGAAGCTCCT
GTGAGGAGCCCCATCTGATGGAGCACCTGTGCCAGGTGCTAGGGCCGTGTTTGCTTCCTG
GGGGCTCAAGGTGACATGGGGGGGAGAGTGGCCACCGTGTGCCTGGGAGGATGGGCTTTA
AGAGATGGGTCCCCCATTCTATCAGGAACTCAAGCTTCTGGCTCTCTCTTTTCTTAGACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               635-746, + strand, RNAz p=0.612169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               635-746, + strand, RNAz p=0.612169

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of M61108, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of M61108, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-840, gnl|bosTau2|chr27 (16670448-16669604)
               

               
               18-840, gnl|Hg17|chr1 (47396237-47395363)
               

               
               18-840, gnl|Mm7|chr4 (114446288-114447102)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-840, gnl|bosTau2|chr27 (16670448-16669604)
               

               
               18-840, gnl|Hg17|chr1 (47396237-47395363)
               

               
               18-840, gnl|Mm7|chr4 (114446288-114447102)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tes (0.207814)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

	18-840, gnl\|bosTau2\|chr27 (16670448-16669604)
	18-840, gnl\|Hg17\|chr1 (47396237-47395363)
	18-840, gnl\|Mm7\|chr4 (114446288-114447102)