Ss1.1-rplac_0488.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GCTTGACACTGAAGACAACATCTACCACCTCAAGATCAAATCCCAGGACCTGTTCCAGAG CTGGGTGGCCCAGCTGCGTGCCCACCGCCTGGCCCAGCACCCGGACCTGCCCCGAGGCCT GCCGCCCAGCGCCACTCACCGGAAGGTTCCTGGTACCCAGCTTCCAGCAGCGGGTAGTGC CTCGGCTCTGCCAGGGGTTGGACCTCGGGAGAAGGTGTCTTCCTGGTTGAGGGACAGTGA TGGGCTCGACCGCTGCTCTCATGAGCTCTCTGAGTGTCAGGGGAAGCTCCAGGAACTACA CAGACTCCTCCAGAGCCTAGAGTCCCTGCACCGGATCCCCTCCGCCCCTGTCATCCCCAC ACACCAGGCCTCGGTGACGACCGAGAGACCCAAGAAGGGGAAGCGGACCAGCCGCATGTG GTGCACACAGAGCTTTGCCAAGGACGATACCATCGGGCGGGTTGGTCGTCTCCACGGTTC TGTTCCCAACCTGTCTCGCTACCTGGAATCCCGGGACCCCTCGGGTCCCCGCGGGCTGCC ACCCCCAGACTATGCCCACTTGCAGCGCAGTTTCTGGGCCCTGGCCCAGAAGGTGCACAG CTCCCTCAGCAGCGTCCTGGCCGCCCTCACTGCTGAACGGGATCGACT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GCTTGACACTGAAGACAACATCTACCACCTCAAGATCAAATCCCAGGACCTGTTCCAGAG CTGGGTGGCCCAGCTGCGTGCCCACCGCCTGGCCCAGCACCCGGACCTGCCCCGAGGCCT GCCGCCCAGCGCCACTCACCGGAAGGTTCCTGGTACCCAGCTTCCAGCAGCGGGTAGTGC CTCGGCTCTGCCAGGGGTTGGACCTCGGGAGAAGGTGTCTTCCTGGTTGAGGGACAGTGA TGGGCTCGACCGCTGCTCTCATGAGCTCTCTGAGTGTCAGGGGAAGCTCCAGGAACTACA CAGACTCCTCCAGAGCCTAGAGTCCCTGCACCGGATCCCCTCCGCCCCTGTCATCCCCAC ACACCAGGCCTCGGTGACGACCGAGAGACCCAAGAAGGGGAAGCGGACCAGCCGCATGTG GTGCACACAGAGCTTTGCCAAGGACGATACCATCGGGCGGGTTGGTCGTCTCCACGGTTC TGTTCCCAACCTGTCTCGCTACCTGGAATCCCGGGACCCCTCGGGTCCCCGCGGGCTGCC ACCCCCAGACTATGCCCACTTGCAGCGCAGTTTCTGGGCCCTGGCCCAGAAGGTGCACAG CTCCCTCAGCAGCGTCCTGGCCGCCCTCACTGCTGAACGGGATCGACT |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 6 entry(ies) | More info |
Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Aligned organism(s): 42 entry(ies) | More info |
Aligned organism(s): 42 entry(ies) | Help | Less info |
134-261, gnl|bosTau2|chr19 (30701223-30701351) | |
134-261, gnl|canFam2|chr9 (27478706-27479007) | |
134-261, gnl|dasNov1|scaffold_8479 (15304-15607) | |
134-261, gnl|echTel1|scaffold_298985 (5344-5638) | |
134-261, gnl|hg17|chr17 (43250608-43250910) | |
134-261, gnl|Hg17|chr17 (43250764-43250636) | |
134-261, gnl|loxAfr1|scaffold_44145 (5478-5775) | |
134-261, gnl|mm7|chr11 (97163941-97163662) | |
134-261, gnl|Mm7|chr11 (97163783-97163913) | |
134-261, gnl|monDom2|scaffold_18 (46687002-46686723) | |
134-261, gnl|oryCun1|scaffold_114548 (4726-4454) | |
134-261, gnl|panTro1|chr19_random (42202695-42202997) | |
134-261, gnl|rheMac2|chr16 (32027958-32028260) | |
134-261, gnl|rn3|chr10 (85790032-85789749) | |
263-368, gnl|bosTau2|chr19 (30701990-30702095) | |
263-368, gnl|canFam2|chr9 (27477951-27478120) | |
263-368, gnl|danRer3|chr12 (23537215-23537136) | |
263-368, gnl|fr1|chrUn (76685079-76685195) | |
263-368, gnl|hg17|chr17 (43249610-43249763) | |
263-368, gnl|Hg17|chr17 (43249725-43249620) | |
263-368, gnl|loxAfr1|scaffold_44145 (4702-4834) | |
263-368, gnl|mm7|chr11 (97164682-97164538) | |
263-368, gnl|Mm7|chr11 (97164565-97164670) | |
263-368, gnl|monDom2|scaffold_18 (46688401-46688259) | |
263-368, gnl|oryCun1|scaffold_114548 (5395-5258) | |
263-368, gnl|panTro1|chr19_random (42201683-42201836) | |
263-368, gnl|rheMac2|chr16 (32026932-32027085) | |
263-368, gnl|rn3|chr10 (85790762-85790627) | |
263-368, gnl|tetNig1|chr2 (10936930-10937017) | |
460-593, gnl|bosTau2|chr19 (30702592-30702725) | |
460-593, gnl|canFam2|chr9 (27477279-27477412) | |
460-593, gnl|echTel1|scaffold_298985 (4110-4243) | |
460-593, gnl|fr1|chrUn (76683935-76684080) | |
460-593, gnl|hg17|chr17 (43248922-43249055) | |
460-593, gnl|Hg17|chr17 (43249061-43248928) | |
460-593, gnl|loxAfr1|scaffold_44145 (4027-4161) | |
460-593, gnl|mm7|chr11 (97165210-97165077) | |
460-593, gnl|Mm7|chr11 (97165069-97165202) | |
460-593, gnl|panTro1|chr19_random (42200995-42201128) | |
460-593, gnl|rheMac2|chr16 (32026237-32026370) | |
460-593, gnl|rn3|chr10 (85791296-85791163) | |
460-593, gnl|tetNig1|chr21 (2897691-2897827) |
Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
134-261, gnl|bosTau2|chr19 (30701223-30701351) | |
134-261, gnl|canFam2|chr9 (27478706-27479007) | |
134-261, gnl|dasNov1|scaffold_8479 (15304-15607) | |
134-261, gnl|echTel1|scaffold_298985 (5344-5638) | |
134-261, gnl|hg17|chr17 (43250608-43250910) | |
134-261, gnl|Hg17|chr17 (43250764-43250636) | |
134-261, gnl|loxAfr1|scaffold_44145 (5478-5775) | |
134-261, gnl|mm7|chr11 (97163941-97163662) | |
134-261, gnl|Mm7|chr11 (97163783-97163913) | |
134-261, gnl|monDom2|scaffold_18 (46687002-46686723) | |
134-261, gnl|oryCun1|scaffold_114548 (4726-4454) | |
134-261, gnl|panTro1|chr19_random (42202695-42202997) | |
134-261, gnl|rheMac2|chr16 (32027958-32028260) | |
134-261, gnl|rn3|chr10 (85790032-85789749) | |
263-368, gnl|bosTau2|chr19 (30701990-30702095) | |
263-368, gnl|canFam2|chr9 (27477951-27478120) | |
263-368, gnl|danRer3|chr12 (23537215-23537136) | |
263-368, gnl|fr1|chrUn (76685079-76685195) | |
263-368, gnl|hg17|chr17 (43249610-43249763) | |
263-368, gnl|Hg17|chr17 (43249725-43249620) | |
263-368, gnl|loxAfr1|scaffold_44145 (4702-4834) | |
263-368, gnl|mm7|chr11 (97164682-97164538) | |
263-368, gnl|Mm7|chr11 (97164565-97164670) | |
263-368, gnl|monDom2|scaffold_18 (46688401-46688259) | |
263-368, gnl|oryCun1|scaffold_114548 (5395-5258) | |
263-368, gnl|panTro1|chr19_random (42201683-42201836) | |
263-368, gnl|rheMac2|chr16 (32026932-32027085) | |
263-368, gnl|rn3|chr10 (85790762-85790627) | |
263-368, gnl|tetNig1|chr2 (10936930-10937017) | |
460-593, gnl|bosTau2|chr19 (30702592-30702725) | |
460-593, gnl|canFam2|chr9 (27477279-27477412) | |
460-593, gnl|echTel1|scaffold_298985 (4110-4243) | |
460-593, gnl|fr1|chrUn (76683935-76684080) | |
460-593, gnl|hg17|chr17 (43248922-43249055) | |
460-593, gnl|Hg17|chr17 (43249061-43248928) | |
460-593, gnl|loxAfr1|scaffold_44145 (4027-4161) | |
460-593, gnl|mm7|chr11 (97165210-97165077) | |
460-593, gnl|Mm7|chr11 (97165069-97165202) | |
460-593, gnl|panTro1|chr19_random (42200995-42201128) | |
460-593, gnl|rheMac2|chr16 (32026237-32026370) | |
460-593, gnl|rn3|chr10 (85791296-85791163) | |
460-593, gnl|tetNig1|chr21 (2897691-2897827) |
Expressed library(ies): 1 entry(ies) | More info |
Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
pla (0.133672) |