Non-Coding RNA Search

Ss1.1-rplac_0630.5

Sequence:


               
               TGTTCCCCATTCCGTGCCTTCCTAGGGAACGGGGGACCACTCGTAGCTCCCCAGGTTTCC
TATGCCCGGGACTCTGGCCCCAGCTGTGAGGTTGGCTGAGTGAAGGAGAGGGCACGGGCT
TTTCTCCCAGCCCCGCCCCTCCCATGCCCCATCTCCTGCATCTTCTCCCCATGCCCTGGC
CCAGGGGGGCGCTCCCTTCGCTTGGCCCCAGCAATTTCTCCCATCCTCCCATCCTCTTCT
CTCAAACTACAAAAGGCCTGCAGCTTCCAGCTCCTTCGTCCCTGGTCCTCAAGTGGTTTC
CTTCGGCGGCTCAGCAGATCCCCCAGAGCAGACGAGGCATCTCCGAGAGGCAGGGAGCAG
ACTGGGCAGGAAGGGCACCTGGCCTCTGACCTCCCAGGAGTGAGTGTGCATGCGTGAGAG
TGTCCATTTGTGTGTGTGTAGAGGAGTGTGTGCATGGGTGTGCCTGTGTCCTGCTTGCAG
GCGAGCAGGATCCCTCATGAGGCCCGGATGTCCCCCACCAGGTGTCCACCACTGTCACTG
CTCCTTTTCACGGTCTGCCTCTGATGCAGGTGAATTGCTAGGACATTCCAAGCGCCAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTCCCCATTCCGTGCCTTCCTAGGGAACGGGGGACCACTCGTAGCTCCCCAGGTTTCC
TATGCCCGGGACTCTGGCCCCAGCTGTGAGGTTGGCTGAGTGAAGGAGAGGGCACGGGCT
TTTCTCCCAGCCCCGCCCCTCCCATGCCCCATCTCCTGCATCTTCTCCCCATGCCCTGGC
CCAGGGGGGCGCTCCCTTCGCTTGGCCCCAGCAATTTCTCCCATCCTCCCATCCTCTTCT
CTCAAACTACAAAAGGCCTGCAGCTTCCAGCTCCTTCGTCCCTGGTCCTCAAGTGGTTTC
CTTCGGCGGCTCAGCAGATCCCCCAGAGCAGACGAGGCATCTCCGAGAGGCAGGGAGCAG
ACTGGGCAGGAAGGGCACCTGGCCTCTGACCTCCCAGGAGTGAGTGTGCATGCGTGAGAG
TGTCCATTTGTGTGTGTGTAGAGGAGTGTGTGCATGGGTGTGCCTGTGTCCTGCTTGCAG
GCGAGCAGGATCCCTCATGAGGCCCGGATGTCCCCCACCAGGTGTCCACCACTGTCACTG
CTCCTTTTCACGGTCTGCCTCTGATGCAGGTGAATTGCTAGGACATTCCAAGCGCCAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               394-504, - strand, RNAz p=0.588282

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               394-504, - strand, RNAz p=0.588282

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC028010, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC028010, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               3-339, gnl|bosTau2|chr19 (30709083-30709433)
               

               
               3-339, gnl|Hg17|chr17 (43240334-43239978)
               

               
               3-339, gnl|Mm7|chr11 (97177408-97177704)
               


               
               355-600, gnl|bosTau2|chr19 (30709420-30709638)
               

               
               355-600, gnl|canFam2|chr9 (27466967-27467315)
               

               
               355-600, gnl|dasNov1|scaffold_8479 (4162-4514)
               

               
               355-600, gnl|echTel1|scaffold_156265 (3660-3980)
               

               
               355-600, gnl|hg17|chr17 (43239753-43240088)
               

               
               355-600, gnl|Hg17|chr17 (43240003-43239751)
               

               
               355-600, gnl|mm7|chr11 (97177924-97177614)
               

               
               355-600, gnl|Mm7|chr11 (97177692-97177924)
               

               
               355-600, gnl|monDom2|scaffold_18 (46697040-46696651)
               

               
               355-600, gnl|panTro1|chr19_random (42111537-42111872)
               

               
               355-600, gnl|rheMac2|chr16 (32016912-32017246)
               

               
               355-600, gnl|rn3|chr10 (85803850-85803546)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-339, gnl|bosTau2|chr19 (30709083-30709433)
               

               
               3-339, gnl|Hg17|chr17 (43240334-43239978)
               

               
               3-339, gnl|Mm7|chr11 (97177408-97177704)
               


               
               355-600, gnl|bosTau2|chr19 (30709420-30709638)
               

               
               355-600, gnl|canFam2|chr9 (27466967-27467315)
               

               
               355-600, gnl|dasNov1|scaffold_8479 (4162-4514)
               

               
               355-600, gnl|echTel1|scaffold_156265 (3660-3980)
               

               
               355-600, gnl|hg17|chr17 (43239753-43240088)
               

               
               355-600, gnl|Hg17|chr17 (43240003-43239751)
               

               
               355-600, gnl|mm7|chr11 (97177924-97177614)
               

               
               355-600, gnl|Mm7|chr11 (97177692-97177924)
               

               
               355-600, gnl|monDom2|scaffold_18 (46697040-46696651)
               

               
               355-600, gnl|panTro1|chr19_random (42111537-42111872)
               

               
               355-600, gnl|rheMac2|chr16 (32016912-32017246)
               

               
               355-600, gnl|rn3|chr10 (85803850-85803546)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)

	3-339, gnl\|bosTau2\|chr19 (30709083-30709433)
	3-339, gnl\|Hg17\|chr17 (43240334-43239978)
	3-339, gnl\|Mm7\|chr11 (97177408-97177704)

	355-600, gnl\|bosTau2\|chr19 (30709420-30709638)
	355-600, gnl\|canFam2\|chr9 (27466967-27467315)
	355-600, gnl\|dasNov1\|scaffold_8479 (4162-4514)
	355-600, gnl\|echTel1\|scaffold_156265 (3660-3980)
	355-600, gnl\|hg17\|chr17 (43239753-43240088)
	355-600, gnl\|Hg17\|chr17 (43240003-43239751)
	355-600, gnl\|mm7\|chr11 (97177924-97177614)
	355-600, gnl\|Mm7\|chr11 (97177692-97177924)
	355-600, gnl\|monDom2\|scaffold_18 (46697040-46696651)
	355-600, gnl\|panTro1\|chr19_random (42111537-42111872)
	355-600, gnl\|rheMac2\|chr16 (32016912-32017246)
	355-600, gnl\|rn3\|chr10 (85803850-85803546)