Non-Coding RNA Search

Ss1.1-rplac_0693.5

Sequence:


               
               TCCCCAAATATGGCTGCTGGGCGAGCCCTGAGGGGGACCCTGCTTCCCGGGGCCACCAGT
GCCCAGCACCCAGGAAACAGTGTGCTGCCACACACAGGCCTTGCCACCCTTGTCAGAGAA
GAGGCAAACCAGGGCCCTCCAGCCTGCCTCTCTCCTGCGGCAGGTTCGAGCCACAAGGGC
CAGCCCGGAGGCCCCCGGAGTCCAGATCTGTCATTGGGTGCTGCCGGCTGTGCCCACTCC
GTTTTTCTGCTCAGGGTCTGAAGCAGCTGCTGTTTCCCTCCTCTGTCCCCACCCCCTGAC
TCTGCCCTGGGCACAGTGCCAGTCCCCCAGAGGGGAAGGGGACTCATGAGCCCCAGGGGC
GGGGAGCCTGAGGCCGGCCTCTGCCTCTCCCAGCCCCCAGCACAATAGGCAGAGATGCAG
CGCTGGCGGGGTGGCTGGGCTGTTGTGGCAGGGGTCTGCGCAGGGCCGTCTCCTGGCTCT
AGCCCTGGTAGCGGTGGCAGGGGAGGGGGGCCCTGCAGCCTGGCAGTGGCCCCACAGCAG
GTCCCTGTGTACAGACATATCTGCATATTTATCAATAAAGCCTTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCAAATATGGCTGCTGGGCGAGCCCTGAGGGGGACCCTGCTTCCCGGGGCCACCAGT
GCCCAGCACCCAGGAAACAGTGTGCTGCCACACACAGGCCTTGCCACCCTTGTCAGAGAA
GAGGCAAACCAGGGCCCTCCAGCCTGCCTCTCTCCTGCGGCAGGTTCGAGCCACAAGGGC
CAGCCCGGAGGCCCCCGGAGTCCAGATCTGTCATTGGGTGCTGCCGGCTGTGCCCACTCC
GTTTTTCTGCTCAGGGTCTGAAGCAGCTGCTGTTTCCCTCCTCTGTCCCCACCCCCTGAC
TCTGCCCTGGGCACAGTGCCAGTCCCCCAGAGGGGAAGGGGACTCATGAGCCCCAGGGGC
GGGGAGCCTGAGGCCGGCCTCTGCCTCTCCCAGCCCCCAGCACAATAGGCAGAGATGCAG
CGCTGGCGGGGTGGCTGGGCTGTTGTGGCAGGGGTCTGCGCAGGGCCGTCTCCTGGCTCT
AGCCCTGGTAGCGGTGGCAGGGGAGGGGGGCCCTGCAGCCTGGCAGTGGCCCCACAGCAG
GTCCCTGTGTACAGACATATCTGCATATTTATCAATAAAGCCTTTTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               234-545, + strand, RNAz p=0.984695

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-545, + strand, RNAz p=0.984695

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               472-572, + strand, RNAmicro p=1
               

               
               464-572, - strand, RNAmicro p=0.999959

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               472-572, + strand, RNAmicro p=1
               

               
               464-572, - strand, RNAmicro p=0.999959

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_024954, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_024954, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-586, gnl|bosTau2|chr26 (10533855-10533298)
               

               
               9-586, gnl|Hg17|chr10 (99320374-99320943)
               

               
               9-586, gnl|Mm7|chr19 (41927944-41928473)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-586, gnl|bosTau2|chr26 (10533855-10533298)
               

               
               9-586, gnl|Hg17|chr10 (99320374-99320943)
               

               
               9-586, gnl|Mm7|chr19 (41927944-41928473)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

	472-572, + strand, RNAmicro p=1
	464-572, - strand, RNAmicro p=0.999959

	9-586, gnl\|bosTau2\|chr26 (10533855-10533298)
	9-586, gnl\|Hg17\|chr10 (99320374-99320943)
	9-586, gnl\|Mm7\|chr19 (41927944-41928473)