Non-Coding RNA Search

Ss1.1-rplac_10824.5

Sequence:


               
               TTGTGTTTAAGA------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
AATTCCTAACCTAACTAAGGTCACAAAGATTTAGTTCTAAGAGTTTTGTGGTTTTAGCTT
TTATATTAAGGTCCCTCTTCCATTTATTATTTTTTGTTAATTTGTGTGGCTGTCCCAGTT
TCCTAGCACCATTTATCAGTGTTGAGCAGTTTTGAAGAAAAAATGGACTATCAGAGTTGT
TGGTTTCCTGGGTGCTTTTTAAAATTTGTTCATGTACTGTTAGTTTTTTGCTTTGCTATT
TTCAGCCCTTCAGCATGCTGGCAAACACATGGAGGATTGCATCGTGGCCTCATACACAGC
GCTACTTCTCGGGTGTCTCTGCCAGGAGAGTCCTGTAAGTAATAGTTCAATACTGTTTTA
TGTATCTTAAAAGGACTCTATTGTGACCACTTTGTAGCTCAAAAAATTTCTGAGCTTCAT
GAATCTTACCTGTGCTGTTGGAACCACAGGCCAGAAATCTATCTCTAGAGTGATTGAATA
CTTGGAACATTGCTAGCTGCTTTACCTTGGCTTCAGGTGCTCGGCAAAGCTGGAGCTATT
CTTAGACAAAGAAAAGTCACGAAAGAAGTCCTTGAAGATATACCAAGAACATTCATCAGT
ATCATTCATATTTGGATTTTAAGGCCACCTGATTTCTTCTTCGTCATGCATTTGCTAAAT
GACAGTTACTACATCAATCTGCAACTATCAAAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTGTTTAAGA------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
AATTCCTAACCTAACTAAGGTCACAAAGATTTAGTTCTAAGAGTTTTGTGGTTTTAGCTT
TTATATTAAGGTCCCTCTTCCATTTATTATTTTTTGTTAATTTGTGTGGCTGTCCCAGTT
TCCTAGCACCATTTATCAGTGTTGAGCAGTTTTGAAGAAAAAATGGACTATCAGAGTTGT
TGGTTTCCTGGGTGCTTTTTAAAATTTGTTCATGTACTGTTAGTTTTTTGCTTTGCTATT
TTCAGCCCTTCAGCATGCTGGCAAACACATGGAGGATTGCATCGTGGCCTCATACACAGC
GCTACTTCTCGGGTGTCTCTGCCAGGAGAGTCCTGTAAGTAATAGTTCAATACTGTTTTA
TGTATCTTAAAAGGACTCTATTGTGACCACTTTGTAGCTCAAAAAATTTCTGAGCTTCAT
GAATCTTACCTGTGCTGTTGGAACCACAGGCCAGAAATCTATCTCTAGAGTGATTGAATA
CTTGGAACATTGCTAGCTGCTTTACCTTGGCTTCAGGTGCTCGGCAAAGCTGGAGCTATT
CTTAGACAAAGAAAAGTCACGAAAGAAGTCCTTGAAGATATACCAAGAACATTCATCAGT
ATCATTCATATTTGGATTTTAAGGCCACCTGATTTCTTCTTCGTCATGCATTTGCTAAAT
GACAGTTACTACATCAATCTGCAACTATCAAAAATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47206220|emb|CAF90267.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47206220|emb|CAF90267.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               88-404, gnl|bosTau2|chr28 (30939271-30939608)
               

               
               88-404, gnl|Hg17|chr10 (88193251-88192953)
               

               
               88-404, gnl|Mm7|chr14 (32172494-32172781)
               


               
               443-708, gnl|bosTau2|chr28 (30943292-30943565)
               

               
               443-708, gnl|Hg17|chr10 (88187345-88187070)
               

               
               443-708, gnl|Mm7|chr14 (32177202-32177476)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-404, gnl|bosTau2|chr28 (30939271-30939608)
               

               
               88-404, gnl|Hg17|chr10 (88193251-88192953)
               

               
               88-404, gnl|Mm7|chr14 (32172494-32172781)
               


               
               443-708, gnl|bosTau2|chr28 (30943292-30943565)
               

               
               443-708, gnl|Hg17|chr10 (88187345-88187070)
               

               
               443-708, gnl|Mm7|chr14 (32177202-32177476)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	88-404, gnl\|bosTau2\|chr28 (30939271-30939608)
	88-404, gnl\|Hg17\|chr10 (88193251-88192953)
	88-404, gnl\|Mm7\|chr14 (32172494-32172781)

	443-708, gnl\|bosTau2\|chr28 (30943292-30943565)
	443-708, gnl\|Hg17\|chr10 (88187345-88187070)
	443-708, gnl\|Mm7\|chr14 (32177202-32177476)