Non-Coding RNA Search

Ss1.1-rplac_11015.5

Sequence:


               
               GGCCCCGCCAGCACCGGGCCACCAGGTAGAAGCTAACTGCAAAGGTGACATAAACCTGGG
AACCGTGTACTTCTTATGTTGCTGCTGCTGGGCCAGGATGAGTTCGGAAGCCCAGTAGGA
AAAGCCAATGACGGTGGCACACTGCAGGACTGTGAGGATGTGGGCGAAGGCATAGCGACG
GGTGATCTTCAGGGCCGGATGCTTGGGCCCAAAGACATCCAGAAGGAATGCAGAGAGACT
ACACAGGATGCCCAGGAAGCAGAAGGCGGCAATGACCCGCAGGAGCAGGACGGTCTGAGG
ATTCATGCAGAAATCTTTCAGCAGGTCCGGGTGCACGTAGCCCAGCACGTCGGAGACCCC
CAGCTCCTGGCGGGAACAGGTGCCACCGTGGATGTGCAACCAGGCAGGCTCGGCGAGGGC
AGTACACAGCGCGGTGATGGACAGGGCACCCGGTAGGGCTGAGGCCAGGCTACGCTCCGG
CTGCTTGGGCAAAGCGCTGCCTCCCGGGCTCCTCCGCCGGCGCCCGCCGGGCAGCCCTGC
GCCTCCGGGGGCGTACATGCCCGGGGCCGCCCGCCGTAGCTCCGCGGTCGCTGCTGGTCG
CCGCCGACCTCCGCGGGGCGCACAGAGCCTGCCAGTCAGCAGGCCTTAAGTGTCTGGATG
GCGTCGCTCCGTCCCGTCAAGGGCTCCTCAGCTCTGCGGGGCCGACCGTTCCCAGGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCCGCCAGCACCGGGCCACCAGGTAGAAGCTAACTGCAAAGGTGACATAAACCTGGG
AACCGTGTACTTCTTATGTTGCTGCTGCTGGGCCAGGATGAGTTCGGAAGCCCAGTAGGA
AAAGCCAATGACGGTGGCACACTGCAGGACTGTGAGGATGTGGGCGAAGGCATAGCGACG
GGTGATCTTCAGGGCCGGATGCTTGGGCCCAAAGACATCCAGAAGGAATGCAGAGAGACT
ACACAGGATGCCCAGGAAGCAGAAGGCGGCAATGACCCGCAGGAGCAGGACGGTCTGAGG
ATTCATGCAGAAATCTTTCAGCAGGTCCGGGTGCACGTAGCCCAGCACGTCGGAGACCCC
CAGCTCCTGGCGGGAACAGGTGCCACCGTGGATGTGCAACCAGGCAGGCTCGGCGAGGGC
AGTACACAGCGCGGTGATGGACAGGGCACCCGGTAGGGCTGAGGCCAGGCTACGCTCCGG
CTGCTTGGGCAAAGCGCTGCCTCCCGGGCTCCTCCGCCGGCGCCCGCCGGGCAGCCCTGC
GCCTCCGGGGGCGTACATGCCCGGGGCCGCCCGCCGTAGCTCCGCGGTCGCTGCTGGTCG
CCGCCGACCTCCGCGGGGCGCACAGAGCCTGCCAGTCAGCAGGCCTTAAGTGTCTGGATG
GCGTCGCTCCGTCCCGTCAAGGGCTCCTCAGCTCTGCGGGGCCGACCGTTCCCAGGCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               O75204_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               O75204_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-170, gnl|bosTau2|chr11 (1758554-1758384)
               

               
               1-170, gnl|Hg17|chr2 (96341579-96341756)
               

               
               1-170, gnl|Mm7|chr2 (126997958-126997782)
               


               
               315-637, gnl|bosTau2|chr11 (1748689-1748367)
               

               
               315-637, gnl|Hg17|chr2 (96352750-96353072)
               

               
               315-637, gnl|Mm7|chr2 (126989662-126989340)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-170, gnl|bosTau2|chr11 (1758554-1758384)
               

               
               1-170, gnl|Hg17|chr2 (96341579-96341756)
               

               
               1-170, gnl|Mm7|chr2 (126997958-126997782)
               


               
               315-637, gnl|bosTau2|chr11 (1748689-1748367)
               

               
               315-637, gnl|Hg17|chr2 (96352750-96353072)
               

               
               315-637, gnl|Mm7|chr2 (126989662-126989340)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-170, gnl\|bosTau2\|chr11 (1758554-1758384)
	1-170, gnl\|Hg17\|chr2 (96341579-96341756)
	1-170, gnl\|Mm7\|chr2 (126997958-126997782)

	315-637, gnl\|bosTau2\|chr11 (1748689-1748367)
	315-637, gnl\|Hg17\|chr2 (96352750-96353072)
	315-637, gnl\|Mm7\|chr2 (126989662-126989340)